miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11050 3' -55.6 NC_002794.1 + 38468 0.78 0.397962
Target:  5'- cCGCGGcgcgcccuuuaugGGCGGAGGaAGCGCGgcggcGCCGGUCg -3'
miRNA:   3'- -GUGCU-------------UCGCCUUC-UCGUGC-----UGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 38605 0.67 0.932933
Target:  5'- gACGAgaGGcCGGAcGGGCGCGucccgacucGCCGGUg -3'
miRNA:   3'- gUGCU--UC-GCCUuCUCGUGC---------UGGCCAg -5'
11050 3' -55.6 NC_002794.1 + 42564 0.69 0.839082
Target:  5'- aCGCGAccccgcGGCGGAcccgcggacggaggAGGGCgcgGCGGCCGGg- -3'
miRNA:   3'- -GUGCU------UCGCCU--------------UCUCG---UGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 43997 0.71 0.772294
Target:  5'- gACGu-GUGGGAGcacGGCGCGGCCGG-Cg -3'
miRNA:   3'- gUGCuuCGCCUUC---UCGUGCUGGCCaG- -5'
11050 3' -55.6 NC_002794.1 + 44274 0.67 0.927857
Target:  5'- -cCGggGaCGGAGGAGUccGCGcccGCCGGg- -3'
miRNA:   3'- guGCuuC-GCCUUCUCG--UGC---UGGCCag -5'
11050 3' -55.6 NC_002794.1 + 44306 0.69 0.833405
Target:  5'- gGCGAGGCGGGGagcgaccgcGAGCGCGG-CGG-Cg -3'
miRNA:   3'- gUGCUUCGCCUU---------CUCGUGCUgGCCaG- -5'
11050 3' -55.6 NC_002794.1 + 44345 0.66 0.954876
Target:  5'- gACGGcgccGGCGaGAccgAGAGCGCGGCgGG-Cg -3'
miRNA:   3'- gUGCU----UCGC-CU---UCUCGUGCUGgCCaG- -5'
11050 3' -55.6 NC_002794.1 + 47811 0.66 0.950939
Target:  5'- gGCGAacaGGCGGAcgAGGG-ACGGgaagcagcuCCGGUCg -3'
miRNA:   3'- gUGCU---UCGCCU--UCUCgUGCU---------GGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 49783 0.68 0.879013
Target:  5'- --gGAGGCGGuuGGGCACGAgCCGaGcCa -3'
miRNA:   3'- gugCUUCGCCuuCUCGUGCU-GGC-CaG- -5'
11050 3' -55.6 NC_002794.1 + 50368 0.69 0.825146
Target:  5'- cCGCGGAGcCGGccG-GCAgGACCGaGUCg -3'
miRNA:   3'- -GUGCUUC-GCCuuCuCGUgCUGGC-CAG- -5'
11050 3' -55.6 NC_002794.1 + 51213 0.67 0.927857
Target:  5'- cCGCGGAGCGGccG-GC-CGGCCgaugggaaacGGUCg -3'
miRNA:   3'- -GUGCUUCGCCuuCuCGuGCUGG----------CCAG- -5'
11050 3' -55.6 NC_002794.1 + 53275 0.69 0.830946
Target:  5'- aACGggGCGGc-GAGCGaccacuccaggugcCGAgCGGUCg -3'
miRNA:   3'- gUGCuuCGCCuuCUCGU--------------GCUgGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 54237 0.74 0.56517
Target:  5'- gAUGAAGCGGccGAGCGCGcgguccacggcGCCGcGUCg -3'
miRNA:   3'- gUGCUUCGCCuuCUCGUGC-----------UGGC-CAG- -5'
11050 3' -55.6 NC_002794.1 + 54924 0.66 0.958594
Target:  5'- aCGCGcAGCGuccgcAGCGCGACCguGGUCa -3'
miRNA:   3'- -GUGCuUCGCcuuc-UCGUGCUGG--CCAG- -5'
11050 3' -55.6 NC_002794.1 + 56282 0.72 0.684454
Target:  5'- aGC-AGGCGGcAGAGCACGAUgcgcgcgCGGUCg -3'
miRNA:   3'- gUGcUUCGCCuUCUCGUGCUG-------GCCAG- -5'
11050 3' -55.6 NC_002794.1 + 56336 0.67 0.927857
Target:  5'- gGCGAcGCGGcgAAGAGCAgcuCGAagaggCGGUCg -3'
miRNA:   3'- gUGCUuCGCC--UUCUCGU---GCUg----GCCAG- -5'
11050 3' -55.6 NC_002794.1 + 58751 0.66 0.950939
Target:  5'- aACGGgcagcuGGCGGAGGAGC-CGcuGCUGGcCu -3'
miRNA:   3'- gUGCU------UCGCCUUCUCGuGC--UGGCCaG- -5'
11050 3' -55.6 NC_002794.1 + 63312 0.77 0.442031
Target:  5'- aACGAaccgauccGGCGGggGgcccgAGCGCgGACCGGUCg -3'
miRNA:   3'- gUGCU--------UCGCCuuC-----UCGUG-CUGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 64814 0.67 0.932933
Target:  5'- cCGCGGacGGCGGc-GAGCcggcgccgACGACCGGa- -3'
miRNA:   3'- -GUGCU--UCGCCuuCUCG--------UGCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 68484 0.67 0.911242
Target:  5'- gCACgGAGGCGGccGAGC-CGGCCGu-- -3'
miRNA:   3'- -GUG-CUUCGCCuuCUCGuGCUGGCcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.