miRNA display CGI


Results 1 - 20 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11050 3' -55.6 NC_002794.1 + 192153 0.66 0.958594
Target:  5'- gCGCGGucGCGGcGGAGCcuGCGGuaGGUCc -3'
miRNA:   3'- -GUGCUu-CGCCuUCUCG--UGCUggCCAG- -5'
11050 3' -55.6 NC_002794.1 + 191307 0.66 0.946779
Target:  5'- aCACGGAuGC-GAGGGGCcgGCGuGCCGGUg -3'
miRNA:   3'- -GUGCUU-CGcCUUCUCG--UGC-UGGCCAg -5'
11050 3' -55.6 NC_002794.1 + 187802 0.67 0.932933
Target:  5'- cCGCGAAGCGagcgagcgaguGAgcGGAGCGCGcUCGGcUCg -3'
miRNA:   3'- -GUGCUUCGC-----------CU--UCUCGUGCuGGCC-AG- -5'
11050 3' -55.6 NC_002794.1 + 186281 0.69 0.849387
Target:  5'- gGCGcGGCGGcaccgcGGCcagGCGGCCGGUCg -3'
miRNA:   3'- gUGCuUCGCCuuc---UCG---UGCUGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 185177 0.67 0.922549
Target:  5'- gCGCGgcGCGGucGGcGCGguCGGCgCGGUCa -3'
miRNA:   3'- -GUGCuuCGCCuuCU-CGU--GCUG-GCCAG- -5'
11050 3' -55.6 NC_002794.1 + 183597 0.74 0.59408
Target:  5'- --gGggGCGGAGGGgggccgcGCGCGGCCGG-Cg -3'
miRNA:   3'- gugCuuCGCCUUCU-------CGUGCUGGCCaG- -5'
11050 3' -55.6 NC_002794.1 + 183423 0.74 0.56517
Target:  5'- --aGAAGCGGGagcgGGAGCGgGACCGG-Cg -3'
miRNA:   3'- gugCUUCGCCU----UCUCGUgCUGGCCaG- -5'
11050 3' -55.6 NC_002794.1 + 183151 0.69 0.833405
Target:  5'- cCGCGGAcacGCGGccGGGCugccCGAgCCGGUCg -3'
miRNA:   3'- -GUGCUU---CGCCuuCUCGu---GCU-GGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 182429 0.67 0.922549
Target:  5'- aCACGGAcaccacGCGGAucucggucucggAGAGCGCGG-CGGUg -3'
miRNA:   3'- -GUGCUU------CGCCU------------UCUCGUGCUgGCCAg -5'
11050 3' -55.6 NC_002794.1 + 182341 0.68 0.899019
Target:  5'- gGCG-AGCGGAcGGGCGggcgggUGACCGGg- -3'
miRNA:   3'- gUGCuUCGCCUuCUCGU------GCUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 182292 0.69 0.833405
Target:  5'- gACGggGCGGGuggacGGGCagacgggcggACGGgCGGUCg -3'
miRNA:   3'- gUGCuuCGCCUu----CUCG----------UGCUgGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 180870 0.72 0.70527
Target:  5'- --gGAGGCGGcGGAuccgGCGCGcCCGGUCu -3'
miRNA:   3'- gugCUUCGCCuUCU----CGUGCuGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 177726 0.69 0.839082
Target:  5'- cCACGggGCGGAuccgaccgacucgcGcGAGU-CGACCGGaUCu -3'
miRNA:   3'- -GUGCuuCGCCU--------------U-CUCGuGCUGGCC-AG- -5'
11050 3' -55.6 NC_002794.1 + 171122 0.7 0.816716
Target:  5'- uCGCGAGG-GGgcGAGgACGAuCCGGUg -3'
miRNA:   3'- -GUGCUUCgCCuuCUCgUGCU-GGCCAg -5'
11050 3' -55.6 NC_002794.1 + 157731 0.68 0.89257
Target:  5'- cCugGAAGCGGAGGAGaGCGuuCGcGcUCa -3'
miRNA:   3'- -GugCUUCGCCUUCUCgUGCugGC-C-AG- -5'
11050 3' -55.6 NC_002794.1 + 157309 0.73 0.66546
Target:  5'- aCACGcGGCGcucgaagacGAAGAcGCGCGuCCGGUCg -3'
miRNA:   3'- -GUGCuUCGC---------CUUCU-CGUGCuGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 156423 0.75 0.555281
Target:  5'- cCACGGccGGCGGguGAGa--GACCGGUCg -3'
miRNA:   3'- -GUGCU--UCGCCuuCUCgugCUGGCCAG- -5'
11050 3' -55.6 NC_002794.1 + 154376 0.66 0.945487
Target:  5'- cCGCGGcGGCGGc-GGGCACGcccguucgcgugguGCCGGUg -3'
miRNA:   3'- -GUGCU-UCGCCuuCUCGUGC--------------UGGCCAg -5'
11050 3' -55.6 NC_002794.1 + 149300 0.66 0.937303
Target:  5'- uCACGGggGGCGGGuguagguAGGGCAagucgGACCGGa- -3'
miRNA:   3'- -GUGCU--UCGCCU-------UCUCGUg----CUGGCCag -5'
11050 3' -55.6 NC_002794.1 + 147810 0.72 0.70527
Target:  5'- aCGCuGAAGCGGcuccAGAGCACcuuGCCGGUg -3'
miRNA:   3'- -GUG-CUUCGCCu---UCUCGUGc--UGGCCAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.