miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11050 5' -57.9 NC_002794.1 + 144645 0.66 0.890769
Target:  5'- uGGAGaaGGCCgUGCUCUUCC-UgCUGu -3'
miRNA:   3'- -UCUUgaCCGGgACGAGAAGGcAgGGC- -5'
11050 5' -57.9 NC_002794.1 + 100074 0.66 0.890769
Target:  5'- uGGAGCUGGCgCCcG-UCUUCCacGUCCgCGu -3'
miRNA:   3'- -UCUUGACCG-GGaCgAGAAGG--CAGG-GC- -5'
11050 5' -57.9 NC_002794.1 + 115803 0.66 0.870181
Target:  5'- uGGAGCgucGGCagaaGCUCUUCCG-CCUGg -3'
miRNA:   3'- -UCUUGa--CCGgga-CGAGAAGGCaGGGC- -5'
11050 5' -57.9 NC_002794.1 + 24204 0.66 0.862907
Target:  5'- cGAGCgcggcGGCCC-GCUCacccgugUCCGUCCa- -3'
miRNA:   3'- uCUUGa----CCGGGaCGAGa------AGGCAGGgc -5'
11050 5' -57.9 NC_002794.1 + 148610 0.67 0.831903
Target:  5'- cGGACUcGGCCCUGCagaUCUgggucUCCGaUCgCGg -3'
miRNA:   3'- uCUUGA-CCGGGACG---AGA-----AGGC-AGgGC- -5'
11050 5' -57.9 NC_002794.1 + 120757 0.67 0.823705
Target:  5'- cAGAcucuGCUGGCCCUGCUgCgacgCCGauucgCCuCGg -3'
miRNA:   3'- -UCU----UGACCGGGACGA-Gaa--GGCa----GG-GC- -5'
11050 5' -57.9 NC_002794.1 + 116972 0.68 0.806823
Target:  5'- aGGAACgGGCCCaGCaggUCguucgCCGUCCgCGg -3'
miRNA:   3'- -UCUUGaCCGGGaCG---AGaa---GGCAGG-GC- -5'
11050 5' -57.9 NC_002794.1 + 30359 0.68 0.804238
Target:  5'- cGAGCgacaGGCCCUgGCUCUUggcgaucgucauggCCG-CCCGc -3'
miRNA:   3'- uCUUGa---CCGGGA-CGAGAA--------------GGCaGGGC- -5'
11050 5' -57.9 NC_002794.1 + 19967 0.68 0.780397
Target:  5'- cGAGCUGcggccGCCCUucggGCUg-UCCGUCCUGg -3'
miRNA:   3'- uCUUGAC-----CGGGA----CGAgaAGGCAGGGC- -5'
11050 5' -57.9 NC_002794.1 + 160290 0.69 0.752839
Target:  5'- cGAugUGGUCgCUGCUCUgguggaugUUCGUCuuGg -3'
miRNA:   3'- uCUugACCGG-GACGAGA--------AGGCAGggC- -5'
11050 5' -57.9 NC_002794.1 + 113412 0.7 0.685411
Target:  5'- cGGAGCUGGUCCaGCacgucggcguUCUgccgcgCCGUCUCGg -3'
miRNA:   3'- -UCUUGACCGGGaCG----------AGAa-----GGCAGGGC- -5'
11050 5' -57.9 NC_002794.1 + 91521 0.7 0.675545
Target:  5'- cGAGCUGGCCUUcaGCUUcgcgUCCGUCUa- -3'
miRNA:   3'- uCUUGACCGGGA--CGAGa---AGGCAGGgc -5'
11050 5' -57.9 NC_002794.1 + 69248 0.71 0.625867
Target:  5'- cGAcCUGGCCC-GCUCgcgcUCCGuacguUCCCGg -3'
miRNA:   3'- uCUuGACCGGGaCGAGa---AGGC-----AGGGC- -5'
11050 5' -57.9 NC_002794.1 + 73771 0.73 0.508606
Target:  5'- aGGAACUGGCgcuccagguCCUGCUgUacCCGUCCCc -3'
miRNA:   3'- -UCUUGACCG---------GGACGAgAa-GGCAGGGc -5'
11050 5' -57.9 NC_002794.1 + 120301 0.8 0.199002
Target:  5'- cGAGCccggGGCCUUGCUgUUCCGUCUCGa -3'
miRNA:   3'- uCUUGa---CCGGGACGAgAAGGCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.