miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 143580 0.66 0.959995
Target:  5'- -cCGuCCUCGGCgGCGCUgUGGUCGAa- -3'
miRNA:   3'- uaGCuGGAGCUG-CGUGA-ACCGGUUgc -5'
11051 3' -55.2 NC_002794.1 + 188322 0.66 0.959995
Target:  5'- cGUCGuCCUCGuCGC-CgccGCCGGCGg -3'
miRNA:   3'- -UAGCuGGAGCuGCGuGaacCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 182195 0.66 0.959995
Target:  5'- --gGGCCUCGGCGCcggcgucgcgccACggGGCUccGACGg -3'
miRNA:   3'- uagCUGGAGCUGCG------------UGaaCCGG--UUGC- -5'
11051 3' -55.2 NC_002794.1 + 92203 0.66 0.959995
Target:  5'- -aCGugCUCGGCaccuucggcaaGCGCUacGCCGGCGa -3'
miRNA:   3'- uaGCugGAGCUG-----------CGUGAacCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 45693 0.66 0.959995
Target:  5'- --gGGCCUCGACGUcggacACguuauugUGGuCCAACa -3'
miRNA:   3'- uagCUGGAGCUGCG-----UGa------ACC-GGUUGc -5'
11051 3' -55.2 NC_002794.1 + 154393 0.66 0.959995
Target:  5'- -aCGcCCguucgCGugGUGCcggUGGCCAGCGc -3'
miRNA:   3'- uaGCuGGa----GCugCGUGa--ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 48052 0.66 0.956336
Target:  5'- -gCGugCUgGGCacgGCGCUgauggccGGCCAGCGg -3'
miRNA:   3'- uaGCugGAgCUG---CGUGAa------CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 58374 0.66 0.956336
Target:  5'- -cCGACUUCcaggaGGCGCGCggGcGCCAGCu -3'
miRNA:   3'- uaGCUGGAG-----CUGCGUGaaC-CGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 135483 0.66 0.956336
Target:  5'- -aCGccGCCgUCGACGCGCgcgGGcCCGAUGc -3'
miRNA:   3'- uaGC--UGG-AGCUGCGUGaa-CC-GGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 189391 0.66 0.95481
Target:  5'- -cUGugCUCGGC-CACguaguccgccagGGCCAGCGg -3'
miRNA:   3'- uaGCugGAGCUGcGUGaa----------CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 18845 0.66 0.95481
Target:  5'- --aGACCUCGAgCGCGCcgucgccgaucGCCAACGc -3'
miRNA:   3'- uagCUGGAGCU-GCGUGaac--------CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 73278 0.66 0.952455
Target:  5'- -cCGACCgcggCGACGCGCccGGUCu-CGg -3'
miRNA:   3'- uaGCUGGa---GCUGCGUGaaCCGGuuGC- -5'
11051 3' -55.2 NC_002794.1 + 99790 0.66 0.952455
Target:  5'- cGUCGACUaCGAgCGCGCgccgcggGcGCCGGCGc -3'
miRNA:   3'- -UAGCUGGaGCU-GCGUGaa-----C-CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 51976 0.66 0.94835
Target:  5'- -cCGGCaUCGugGCGCUcGGCCGc-- -3'
miRNA:   3'- uaGCUGgAGCugCGUGAaCCGGUugc -5'
11051 3' -55.2 NC_002794.1 + 40517 0.66 0.944016
Target:  5'- -aCGGCCgcCGACGCgccgacgggagACgagggGGCCGGCGg -3'
miRNA:   3'- uaGCUGGa-GCUGCG-----------UGaa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 109286 0.66 0.944016
Target:  5'- cUCu-CCgcCGACGCGC-UGGCCAACc -3'
miRNA:   3'- uAGcuGGa-GCUGCGUGaACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 106991 0.67 0.939451
Target:  5'- -aCGGCggUGGCgGCGC-UGGCCGACGc -3'
miRNA:   3'- uaGCUGgaGCUG-CGUGaACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 90600 0.67 0.939451
Target:  5'- cGUCgGGCCUCGACGguCgcGGUgGAUGa -3'
miRNA:   3'- -UAG-CUGGAGCUGCguGaaCCGgUUGC- -5'
11051 3' -55.2 NC_002794.1 + 120963 0.67 0.939451
Target:  5'- cGUCGACCUCGGC-Cc---GGCCuGCGa -3'
miRNA:   3'- -UAGCUGGAGCUGcGugaaCCGGuUGC- -5'
11051 3' -55.2 NC_002794.1 + 98686 0.67 0.939451
Target:  5'- gAUCGACCUCGACuCGaucgacgUGGUgAACa -3'
miRNA:   3'- -UAGCUGGAGCUGcGUga-----ACCGgUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.