Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11051 | 3' | -55.2 | NC_002794.1 | + | 30623 | 0.68 | 0.900954 |
Target: 5'- uGUCGACCggCGAgGCGaa-GGCUAACa -3' miRNA: 3'- -UAGCUGGa-GCUgCGUgaaCCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 81852 | 0.68 | 0.897125 |
Target: 5'- cUCGACCUccgcagcggacacaaCGACGUGCUcugGGCCA-CGc -3' miRNA: 3'- uAGCUGGA---------------GCUGCGUGAa--CCGGUuGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 69194 | 0.68 | 0.900954 |
Target: 5'- -cCGGCacgCGGCccGCAgCUUGGCCAGCa -3' miRNA: 3'- uaGCUGga-GCUG--CGU-GAACCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 195117 | 0.68 | 0.900954 |
Target: 5'- cUCGugCgcccgCGGCGCGCgcgGGCUcGCGu -3' miRNA: 3'- uAGCugGa----GCUGCGUGaa-CCGGuUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 141805 | 0.68 | 0.900954 |
Target: 5'- gGUCGGCCUCGGacaGcCGgUUGGaCGACGa -3' miRNA: 3'- -UAGCUGGAGCUg--C-GUgAACCgGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 12946 | 0.68 | 0.907152 |
Target: 5'- --gGACUUCGugGCG-UUGGCCGuguCGg -3' miRNA: 3'- uagCUGGAGCugCGUgAACCGGUu--GC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 129186 | 0.68 | 0.907152 |
Target: 5'- gAUCGGCCuccgggUCGACGaccgaGC--GGCCGACGg -3' miRNA: 3'- -UAGCUGG------AGCUGCg----UGaaCCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 180368 | 0.68 | 0.907152 |
Target: 5'- -aCGACCggcgCGAgGaCGCUgccGGCCAGCu -3' miRNA: 3'- uaGCUGGa---GCUgC-GUGAa--CCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 157656 | 0.68 | 0.907152 |
Target: 5'- -aCGAUCcCGACGCGCUggcggcuugGGCCGcuugGCGu -3' miRNA: 3'- uaGCUGGaGCUGCGUGAa--------CCGGU----UGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 104419 | 0.69 | 0.859097 |
Target: 5'- cUCGGCCUCGGC-CGCc-GGCCcgGACGc -3' miRNA: 3'- uAGCUGGAGCUGcGUGaaCCGG--UUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 113868 | 0.69 | 0.835384 |
Target: 5'- -cCGGCCa-GGCGCGCUcGGCCGcgGCGc -3' miRNA: 3'- uaGCUGGagCUGCGUGAaCCGGU--UGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 67577 | 0.69 | 0.835384 |
Target: 5'- -cCGACCggUCGGCGgACUUGGUCAu-- -3' miRNA: 3'- uaGCUGG--AGCUGCgUGAACCGGUugc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 50571 | 0.69 | 0.841875 |
Target: 5'- uGUCGACa-CGGCGUGCgcggcggcugggUGGCCGGCGc -3' miRNA: 3'- -UAGCUGgaGCUGCGUGa-----------ACCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 126245 | 0.69 | 0.835384 |
Target: 5'- -gCGAUCgUGGCGCGCgaGGUCGGCGg -3' miRNA: 3'- uaGCUGGaGCUGCGUGaaCCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 75456 | 0.69 | 0.866608 |
Target: 5'- cUCGGCCUCGGCGCcccguaccacgGCgccgagacGGCCcGCGu -3' miRNA: 3'- uAGCUGGAGCUGCG-----------UGaa------CCGGuUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 106315 | 0.69 | 0.859097 |
Target: 5'- -aCGAgCgCGACGCGCgcgacgGGUCGACGg -3' miRNA: 3'- uaGCUgGaGCUGCGUGaa----CCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 22770 | 0.69 | 0.873911 |
Target: 5'- -aCGACCgCGACGCGCguugUGaCCGACc -3' miRNA: 3'- uaGCUGGaGCUGCGUGa---ACcGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 80574 | 0.7 | 0.818656 |
Target: 5'- -cCGugC-CGACGCACg-GGCUGACGg -3' miRNA: 3'- uaGCugGaGCUGCGUGaaCCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 70656 | 0.7 | 0.818656 |
Target: 5'- cUUGGCCUCG-UGCGCggcGGCCGccGCGg -3' miRNA: 3'- uAGCUGGAGCuGCGUGaa-CCGGU--UGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 43030 | 0.7 | 0.818656 |
Target: 5'- cGUCGGCCUCcauCGCGCggcaGGCCGAg- -3' miRNA: 3'- -UAGCUGGAGcu-GCGUGaa--CCGGUUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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