Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11051 | 3' | -55.2 | NC_002794.1 | + | 12946 | 0.68 | 0.907152 |
Target: 5'- --gGACUUCGugGCG-UUGGCCGuguCGg -3' miRNA: 3'- uagCUGGAGCugCGUgAACCGGUu--GC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 157656 | 0.68 | 0.907152 |
Target: 5'- -aCGAUCcCGACGCGCUggcggcuugGGCCGcuugGCGu -3' miRNA: 3'- uaGCUGGaGCUGCGUGAa--------CCGGU----UGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 180368 | 0.68 | 0.907152 |
Target: 5'- -aCGACCggcgCGAgGaCGCUgccGGCCAGCu -3' miRNA: 3'- uaGCUGGa---GCUgC-GUGAa--CCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 96738 | 0.68 | 0.881001 |
Target: 5'- -aCGACCgcCGGCGCGuCUcgcaagcGGCCGGCGg -3' miRNA: 3'- uaGCUGGa-GCUGCGU-GAa------CCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 151299 | 0.68 | 0.887875 |
Target: 5'- -aCGGCUUCGuCGuCAaggUGGCCAACa -3' miRNA: 3'- uaGCUGGAGCuGC-GUga-ACCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 129186 | 0.68 | 0.907152 |
Target: 5'- gAUCGGCCuccgggUCGACGaccgaGC--GGCCGACGg -3' miRNA: 3'- -UAGCUGG------AGCUGCg----UGaaCCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 96866 | 0.68 | 0.887875 |
Target: 5'- cGUCGuguCCUCGACGgACggUGGCgCuACGg -3' miRNA: 3'- -UAGCu--GGAGCUGCgUGa-ACCG-GuUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 195117 | 0.68 | 0.900954 |
Target: 5'- cUCGugCgcccgCGGCGCGCgcgGGCUcGCGu -3' miRNA: 3'- uAGCugGa----GCUGCGUGaa-CCGGuUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 69194 | 0.68 | 0.900954 |
Target: 5'- -cCGGCacgCGGCccGCAgCUUGGCCAGCa -3' miRNA: 3'- uaGCUGga-GCUG--CGU-GAACCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 81852 | 0.68 | 0.897125 |
Target: 5'- cUCGACCUccgcagcggacacaaCGACGUGCUcugGGCCA-CGc -3' miRNA: 3'- uAGCUGGA---------------GCUGCGUGAa--CCGGUuGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 30623 | 0.68 | 0.900954 |
Target: 5'- uGUCGACCggCGAgGCGaa-GGCUAACa -3' miRNA: 3'- -UAGCUGGa-GCUgCGUgaaCCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 103562 | 0.68 | 0.894527 |
Target: 5'- -aUGGCgUcCGACGC-CgUGGCCGACGa -3' miRNA: 3'- uaGCUGgA-GCUGCGuGaACCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 14515 | 0.68 | 0.894527 |
Target: 5'- -gCGGCgCUCGugGCGCcgcucGGCCAcgGCGc -3' miRNA: 3'- uaGCUG-GAGCugCGUGaa---CCGGU--UGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 78679 | 0.68 | 0.894527 |
Target: 5'- cUCGGCCgcCGGcCGCAUgugcGGCCGACa -3' miRNA: 3'- uAGCUGGa-GCU-GCGUGaa--CCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 25120 | 0.67 | 0.939451 |
Target: 5'- gGUCGAgaUCGagcggggcacgcGCGCACgguaGGCCAGCGu -3' miRNA: 3'- -UAGCUggAGC------------UGCGUGaa--CCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 19728 | 0.67 | 0.933666 |
Target: 5'- gAUCGACCgcgaguuccuaGACGCGCU-GGCCcuccuguauaacAACGa -3' miRNA: 3'- -UAGCUGGag---------CUGCGUGAaCCGG------------UUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 48880 | 0.67 | 0.934654 |
Target: 5'- -gCGGCCagGugGCA---GGCCAGCGu -3' miRNA: 3'- uaGCUGGagCugCGUgaaCCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 145914 | 0.67 | 0.929622 |
Target: 5'- aGUCGACCgCGcCGaGCggaggGGCCGGCGa -3' miRNA: 3'- -UAGCUGGaGCuGCgUGaa---CCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 20735 | 0.67 | 0.929622 |
Target: 5'- --aGACCcugugCGACGCGCUgauccGCCAGCu -3' miRNA: 3'- uagCUGGa----GCUGCGUGAac---CGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 35552 | 0.67 | 0.924356 |
Target: 5'- -cCGGCgCUCGcgcGCGCGCguggUGGCCcaGGCGu -3' miRNA: 3'- uaGCUG-GAGC---UGCGUGa---ACCGG--UUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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