miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 98686 0.67 0.939451
Target:  5'- gAUCGACCUCGACuCGaucgacgUGGUgAACa -3'
miRNA:   3'- -UAGCUGGAGCUGcGUga-----ACCGgUUGc -5'
11051 3' -55.2 NC_002794.1 + 106991 0.67 0.939451
Target:  5'- -aCGGCggUGGCgGCGC-UGGCCGACGc -3'
miRNA:   3'- uaGCUGgaGCUG-CGUGaACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 102014 0.67 0.934654
Target:  5'- cUCGGCCUacaucgaGGCGCAUUUcgccGaGCCGGCGu -3'
miRNA:   3'- uAGCUGGAg------CUGCGUGAA----C-CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 19728 0.67 0.933666
Target:  5'- gAUCGACCgcgaguuccuaGACGCGCU-GGCCcuccuguauaacAACGa -3'
miRNA:   3'- -UAGCUGGag---------CUGCGUGAaCCGG------------UUGC- -5'
11051 3' -55.2 NC_002794.1 + 122727 0.67 0.929622
Target:  5'- uUCGACCU-GugGCACacgcaGGCCG-CGg -3'
miRNA:   3'- uAGCUGGAgCugCGUGaa---CCGGUuGC- -5'
11051 3' -55.2 NC_002794.1 + 76408 0.67 0.918855
Target:  5'- gAUCuuCCUCGACGguCUgcaGGCCaAGCGc -3'
miRNA:   3'- -UAGcuGGAGCUGCguGAa--CCGG-UUGC- -5'
11051 3' -55.2 NC_002794.1 + 93765 0.67 0.918855
Target:  5'- -cCGACCUCuugcgGACGCGCgu-GCUGGCGg -3'
miRNA:   3'- uaGCUGGAG-----CUGCGUGaacCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 556 0.67 0.929622
Target:  5'- -cCGGCCUCGGCGCgGCggUGGCa---- -3'
miRNA:   3'- uaGCUGGAGCUGCG-UGa-ACCGguugc -5'
11051 3' -55.2 NC_002794.1 + 35552 0.67 0.924356
Target:  5'- -cCGGCgCUCGcgcGCGCGCguggUGGCCcaGGCGu -3'
miRNA:   3'- uaGCUG-GAGC---UGCGUGa---ACCGG--UUGC- -5'
11051 3' -55.2 NC_002794.1 + 20735 0.67 0.929622
Target:  5'- --aGACCcugugCGACGCGCUgauccGCCAGCu -3'
miRNA:   3'- uagCUGGa----GCUGCGUGAac---CGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 145914 0.67 0.929622
Target:  5'- aGUCGACCgCGcCGaGCggaggGGCCGGCGa -3'
miRNA:   3'- -UAGCUGGaGCuGCgUGaa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 48880 0.67 0.934654
Target:  5'- -gCGGCCagGugGCA---GGCCAGCGu -3'
miRNA:   3'- uaGCUGGagCugCGUgaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 99790 0.66 0.952455
Target:  5'- cGUCGACUaCGAgCGCGCgccgcggGcGCCGGCGc -3'
miRNA:   3'- -UAGCUGGaGCU-GCGUGaa-----C-CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 45693 0.66 0.959995
Target:  5'- --gGGCCUCGACGUcggacACguuauugUGGuCCAACa -3'
miRNA:   3'- uagCUGGAGCUGCG-----UGa------ACC-GGUUGc -5'
11051 3' -55.2 NC_002794.1 + 154393 0.66 0.959995
Target:  5'- -aCGcCCguucgCGugGUGCcggUGGCCAGCGc -3'
miRNA:   3'- uaGCuGGa----GCugCGUGa--ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 135483 0.66 0.956336
Target:  5'- -aCGccGCCgUCGACGCGCgcgGGcCCGAUGc -3'
miRNA:   3'- uaGC--UGG-AGCUGCGUGaa-CC-GGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 189391 0.66 0.95481
Target:  5'- -cUGugCUCGGC-CACguaguccgccagGGCCAGCGg -3'
miRNA:   3'- uaGCugGAGCUGcGUGaa----------CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 18845 0.66 0.95481
Target:  5'- --aGACCUCGAgCGCGCcgucgccgaucGCCAACGc -3'
miRNA:   3'- uagCUGGAGCU-GCGUGaac--------CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 73278 0.66 0.952455
Target:  5'- -cCGACCgcggCGACGCGCccGGUCu-CGg -3'
miRNA:   3'- uaGCUGGa---GCUGCGUGaaCCGGuuGC- -5'
11051 3' -55.2 NC_002794.1 + 51976 0.66 0.94835
Target:  5'- -cCGGCaUCGugGCGCUcGGCCGc-- -3'
miRNA:   3'- uaGCUGgAGCugCGUGAaCCGGUugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.