miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 125655 0.78 0.373332
Target:  5'- uUCuGCCUCGGCGCGCUgaacgggcucUGGCUGACGg -3'
miRNA:   3'- uAGcUGGAGCUGCGUGA----------ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 23946 0.78 0.388884
Target:  5'- -cCGGCCgCGGCGCACUUGGCuccgagcCAGCGg -3'
miRNA:   3'- uaGCUGGaGCUGCGUGAACCG-------GUUGC- -5'
11051 3' -55.2 NC_002794.1 + 150715 0.76 0.487656
Target:  5'- gAUCGACUUCGACGUGCggcGGCUGACc -3'
miRNA:   3'- -UAGCUGGAGCUGCGUGaa-CCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 119669 0.75 0.542761
Target:  5'- cUCGACCUcCGGCGUccccggcgucuccgGCUgcugGGCCGGCGg -3'
miRNA:   3'- uAGCUGGA-GCUGCG--------------UGAa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 33020 0.75 0.555632
Target:  5'- cGUCGuACCUCGACGCcCgcgGaGCCGACGc -3'
miRNA:   3'- -UAGC-UGGAGCUGCGuGaa-C-CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 82465 0.74 0.585645
Target:  5'- -cCGACCUCGACGC-CgucGGCCuccGCGa -3'
miRNA:   3'- uaGCUGGAGCUGCGuGaa-CCGGu--UGC- -5'
11051 3' -55.2 NC_002794.1 + 187463 0.74 0.615954
Target:  5'- cUCGGCgucgCUCGGCGCGCgccgGGCCGAgGa -3'
miRNA:   3'- uAGCUG----GAGCUGCGUGaa--CCGGUUgC- -5'
11051 3' -55.2 NC_002794.1 + 112312 0.72 0.703697
Target:  5'- -cCGACUUCGGCGCcgacggcggggagcGCgccGGCCGGCGg -3'
miRNA:   3'- uaGCUGGAGCUGCG--------------UGaa-CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 31759 0.72 0.706675
Target:  5'- gGUCGAUguaCUCGAUGUGCUccggGGUCAGCGg -3'
miRNA:   3'- -UAGCUG---GAGCUGCGUGAa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 53129 0.72 0.71656
Target:  5'- cGUCGACCgCGGCGCucagcccgGCauaGGCCAGCGc -3'
miRNA:   3'- -UAGCUGGaGCUGCG--------UGaa-CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 11634 0.72 0.726374
Target:  5'- cUCGACCcacagCGACGgGC--GGCCGACGa -3'
miRNA:   3'- uAGCUGGa----GCUGCgUGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 67075 0.71 0.745754
Target:  5'- -cUGGCCUUGAUGUACgugucggGGCCGACc -3'
miRNA:   3'- uaGCUGGAGCUGCGUGaa-----CCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 62142 0.71 0.755302
Target:  5'- -gCGACCUCGACGCGCgcuucUGcGUCuuCGa -3'
miRNA:   3'- uaGCUGGAGCUGCGUGa----AC-CGGuuGC- -5'
11051 3' -55.2 NC_002794.1 + 48614 0.71 0.755302
Target:  5'- cGUCGGCCUCaGACGCGgagcGGCCGuCGg -3'
miRNA:   3'- -UAGCUGGAG-CUGCGUgaa-CCGGUuGC- -5'
11051 3' -55.2 NC_002794.1 + 152942 0.71 0.759092
Target:  5'- cAUCGACCUccucuccggacacgcCGACGC-CUUGGUCGggGCGc -3'
miRNA:   3'- -UAGCUGGA---------------GCUGCGuGAACCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 119469 0.71 0.764743
Target:  5'- uUCGACUucuUCGACGU-CUUGGUCGGCu -3'
miRNA:   3'- uAGCUGG---AGCUGCGuGAACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 81429 0.71 0.774069
Target:  5'- -cCGGCUUCGAgacCGCGCcUGuGCCGACGu -3'
miRNA:   3'- uaGCUGGAGCU---GCGUGaAC-CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 57400 0.71 0.774069
Target:  5'- -cCGGCUcCGGCGCcCgcgUGGCCGGCGu -3'
miRNA:   3'- uaGCUGGaGCUGCGuGa--ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 146286 0.71 0.774069
Target:  5'- cGUCGACCUCGucguCGCGCaggUGuugacgggcucGCCGACGc -3'
miRNA:   3'- -UAGCUGGAGCu---GCGUGa--AC-----------CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 13795 0.71 0.78327
Target:  5'- -cCGGCCgucuucgCGACGgGCccGGCCGGCGg -3'
miRNA:   3'- uaGCUGGa------GCUGCgUGaaCCGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.