miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 177616 0.71 0.78327
Target:  5'- gGUCGAucgcuCCUCGACG-ACgaGGCCGACc -3'
miRNA:   3'- -UAGCU-----GGAGCUGCgUGaaCCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 13795 0.71 0.78327
Target:  5'- -cCGGCCgucuucgCGACGgGCccGGCCGGCGg -3'
miRNA:   3'- uaGCUGGa------GCUGCgUGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 143026 0.7 0.792337
Target:  5'- gGUCGGCCgggUCGACGUGCagGGCCGcCa -3'
miRNA:   3'- -UAGCUGG---AGCUGCGUGaaCCGGUuGc -5'
11051 3' -55.2 NC_002794.1 + 57580 0.7 0.801263
Target:  5'- -cCGACUUCGAgucacaggcCGCGCgcgUGGCCAcCGa -3'
miRNA:   3'- uaGCUGGAGCU---------GCGUGa--ACCGGUuGC- -5'
11051 3' -55.2 NC_002794.1 + 12375 0.7 0.801263
Target:  5'- -gCGugCUCGccugcCGCGCUcgccUGGCCGACa -3'
miRNA:   3'- uaGCugGAGCu----GCGUGA----ACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 53594 0.7 0.810039
Target:  5'- uGUCGGCgUCGGCGuCACcgGGCCGccGCa -3'
miRNA:   3'- -UAGCUGgAGCUGC-GUGaaCCGGU--UGc -5'
11051 3' -55.2 NC_002794.1 + 54130 0.7 0.810039
Target:  5'- -aCGAUCUuCGgcACGUugUUGGCCAGCc -3'
miRNA:   3'- uaGCUGGA-GC--UGCGugAACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 43030 0.7 0.818656
Target:  5'- cGUCGGCCUCcauCGCGCggcaGGCCGAg- -3'
miRNA:   3'- -UAGCUGGAGcu-GCGUGaa--CCGGUUgc -5'
11051 3' -55.2 NC_002794.1 + 70656 0.7 0.818656
Target:  5'- cUUGGCCUCG-UGCGCggcGGCCGccGCGg -3'
miRNA:   3'- uAGCUGGAGCuGCGUGaa-CCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 80574 0.7 0.818656
Target:  5'- -cCGugC-CGACGCACg-GGCUGACGg -3'
miRNA:   3'- uaGCugGaGCUGCGUGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 73642 0.7 0.827107
Target:  5'- -aCGACCU-GugGCuggUGGCCGACa -3'
miRNA:   3'- uaGCUGGAgCugCGugaACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 67577 0.69 0.835384
Target:  5'- -cCGACCggUCGGCGgACUUGGUCAu-- -3'
miRNA:   3'- uaGCUGG--AGCUGCgUGAACCGGUugc -5'
11051 3' -55.2 NC_002794.1 + 126245 0.69 0.835384
Target:  5'- -gCGAUCgUGGCGCGCgaGGUCGGCGg -3'
miRNA:   3'- uaGCUGGaGCUGCGUGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 113868 0.69 0.835384
Target:  5'- -cCGGCCa-GGCGCGCUcGGCCGcgGCGc -3'
miRNA:   3'- uaGCUGGagCUGCGUGAaCCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 50571 0.69 0.841875
Target:  5'- uGUCGACa-CGGCGUGCgcggcggcugggUGGCCGGCGc -3'
miRNA:   3'- -UAGCUGgaGCUGCGUGa-----------ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 104419 0.69 0.859097
Target:  5'- cUCGGCCUCGGC-CGCc-GGCCcgGACGc -3'
miRNA:   3'- uAGCUGGAGCUGcGUGaaCCGG--UUGC- -5'
11051 3' -55.2 NC_002794.1 + 106315 0.69 0.859097
Target:  5'- -aCGAgCgCGACGCGCgcgacgGGUCGACGg -3'
miRNA:   3'- uaGCUgGaGCUGCGUGaa----CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 75456 0.69 0.866608
Target:  5'- cUCGGCCUCGGCGCcccguaccacgGCgccgagacGGCCcGCGu -3'
miRNA:   3'- uAGCUGGAGCUGCG-----------UGaa------CCGGuUGC- -5'
11051 3' -55.2 NC_002794.1 + 22770 0.69 0.873911
Target:  5'- -aCGACCgCGACGCGCguugUGaCCGACc -3'
miRNA:   3'- uaGCUGGaGCUGCGUGa---ACcGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 96738 0.68 0.881001
Target:  5'- -aCGACCgcCGGCGCGuCUcgcaagcGGCCGGCGg -3'
miRNA:   3'- uaGCUGGa-GCUGCGU-GAa------CCGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.