miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 145914 0.67 0.929622
Target:  5'- aGUCGACCgCGcCGaGCggaggGGCCGGCGa -3'
miRNA:   3'- -UAGCUGGaGCuGCgUGaa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 19728 0.67 0.933666
Target:  5'- gAUCGACCgcgaguuccuaGACGCGCU-GGCCcuccuguauaacAACGa -3'
miRNA:   3'- -UAGCUGGag---------CUGCGUGAaCCGG------------UUGC- -5'
11051 3' -55.2 NC_002794.1 + 146684 0.67 0.934654
Target:  5'- -aCG-UCUCGGCGCuCgaGGCCGACu -3'
miRNA:   3'- uaGCuGGAGCUGCGuGaaCCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 102014 0.67 0.934654
Target:  5'- cUCGGCCUacaucgaGGCGCAUUUcgccGaGCCGGCGu -3'
miRNA:   3'- uAGCUGGAg------CUGCGUGAA----C-CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 48880 0.67 0.934654
Target:  5'- -gCGGCCagGugGCA---GGCCAGCGu -3'
miRNA:   3'- uaGCUGGagCugCGUgaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 44714 0.67 0.939451
Target:  5'- -gCGACCgCGGCG-ACgucGGCCGGCGc -3'
miRNA:   3'- uaGCUGGaGCUGCgUGaa-CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 76834 0.67 0.939451
Target:  5'- -gCGGCCggCGAUGCGCgccGGCCucguCGg -3'
miRNA:   3'- uaGCUGGa-GCUGCGUGaa-CCGGuu--GC- -5'
11051 3' -55.2 NC_002794.1 + 25120 0.67 0.939451
Target:  5'- gGUCGAgaUCGagcggggcacgcGCGCACgguaGGCCAGCGu -3'
miRNA:   3'- -UAGCUggAGC------------UGCGUGaa--CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 120963 0.67 0.939451
Target:  5'- cGUCGACCUCGGC-Cc---GGCCuGCGa -3'
miRNA:   3'- -UAGCUGGAGCUGcGugaaCCGGuUGC- -5'
11051 3' -55.2 NC_002794.1 + 90600 0.67 0.939451
Target:  5'- cGUCgGGCCUCGACGguCgcGGUgGAUGa -3'
miRNA:   3'- -UAG-CUGGAGCUGCguGaaCCGgUUGC- -5'
11051 3' -55.2 NC_002794.1 + 98686 0.67 0.939451
Target:  5'- gAUCGACCUCGACuCGaucgacgUGGUgAACa -3'
miRNA:   3'- -UAGCUGGAGCUGcGUga-----ACCGgUUGc -5'
11051 3' -55.2 NC_002794.1 + 106991 0.67 0.939451
Target:  5'- -aCGGCggUGGCgGCGC-UGGCCGACGc -3'
miRNA:   3'- uaGCUGgaGCUG-CGUGaACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 40517 0.66 0.944016
Target:  5'- -aCGGCCgcCGACGCgccgacgggagACgagggGGCCGGCGg -3'
miRNA:   3'- uaGCUGGa-GCUGCG-----------UGaa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 109286 0.66 0.944016
Target:  5'- cUCu-CCgcCGACGCGC-UGGCCAACc -3'
miRNA:   3'- uAGcuGGa-GCUGCGUGaACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 51976 0.66 0.94835
Target:  5'- -cCGGCaUCGugGCGCUcGGCCGc-- -3'
miRNA:   3'- uaGCUGgAGCugCGUGAaCCGGUugc -5'
11051 3' -55.2 NC_002794.1 + 99790 0.66 0.952455
Target:  5'- cGUCGACUaCGAgCGCGCgccgcggGcGCCGGCGc -3'
miRNA:   3'- -UAGCUGGaGCU-GCGUGaa-----C-CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 73278 0.66 0.952455
Target:  5'- -cCGACCgcggCGACGCGCccGGUCu-CGg -3'
miRNA:   3'- uaGCUGGa---GCUGCGUGaaCCGGuuGC- -5'
11051 3' -55.2 NC_002794.1 + 18845 0.66 0.95481
Target:  5'- --aGACCUCGAgCGCGCcgucgccgaucGCCAACGc -3'
miRNA:   3'- uagCUGGAGCU-GCGUGaac--------CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 189391 0.66 0.95481
Target:  5'- -cUGugCUCGGC-CACguaguccgccagGGCCAGCGg -3'
miRNA:   3'- uaGCugGAGCUGcGUGaa----------CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 48052 0.66 0.956336
Target:  5'- -gCGugCUgGGCacgGCGCUgauggccGGCCAGCGg -3'
miRNA:   3'- uaGCugGAgCUG---CGUGAa------CCGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.