Results 81 - 88 of 88 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11051 | 3' | -55.2 | NC_002794.1 | + | 58374 | 0.66 | 0.956336 |
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Target: 5'- -cCGACUUCcaggaGGCGCGCggGcGCCAGCu -3' miRNA: 3'- uaGCUGGAG-----CUGCGUGaaC-CGGUUGc -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 135483 | 0.66 | 0.956336 |
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Target: 5'- -aCGccGCCgUCGACGCGCgcgGGcCCGAUGc -3' miRNA: 3'- uaGC--UGG-AGCUGCGUGaa-CC-GGUUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 143580 | 0.66 | 0.959995 |
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Target: 5'- -cCGuCCUCGGCgGCGCUgUGGUCGAa- -3' miRNA: 3'- uaGCuGGAGCUG-CGUGA-ACCGGUUgc -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 188322 | 0.66 | 0.959995 |
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Target: 5'- cGUCGuCCUCGuCGC-CgccGCCGGCGg -3' miRNA: 3'- -UAGCuGGAGCuGCGuGaacCGGUUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 182195 | 0.66 | 0.959995 |
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Target: 5'- --gGGCCUCGGCGCcggcgucgcgccACggGGCUccGACGg -3' miRNA: 3'- uagCUGGAGCUGCG------------UGaaCCGG--UUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 92203 | 0.66 | 0.959995 |
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Target: 5'- -aCGugCUCGGCaccuucggcaaGCGCUacGCCGGCGa -3' miRNA: 3'- uaGCugGAGCUG-----------CGUGAacCGGUUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 45693 | 0.66 | 0.959995 |
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Target: 5'- --gGGCCUCGACGUcggacACguuauugUGGuCCAACa -3' miRNA: 3'- uagCUGGAGCUGCG-----UGa------ACC-GGUUGc -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 154393 | 0.66 | 0.959995 |
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Target: 5'- -aCGcCCguucgCGugGUGCcggUGGCCAGCGc -3' miRNA: 3'- uaGCuGGa----GCugCGUGa--ACCGGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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