miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 90600 0.67 0.939451
Target:  5'- cGUCgGGCCUCGACGguCgcGGUgGAUGa -3'
miRNA:   3'- -UAG-CUGGAGCUGCguGaaCCGgUUGC- -5'
11051 3' -55.2 NC_002794.1 + 106991 0.67 0.939451
Target:  5'- -aCGGCggUGGCgGCGC-UGGCCGACGc -3'
miRNA:   3'- uaGCUGgaGCUG-CGUGaACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 25120 0.67 0.939451
Target:  5'- gGUCGAgaUCGagcggggcacgcGCGCACgguaGGCCAGCGu -3'
miRNA:   3'- -UAGCUggAGC------------UGCGUGaa--CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 146684 0.67 0.934654
Target:  5'- -aCG-UCUCGGCGCuCgaGGCCGACu -3'
miRNA:   3'- uaGCuGGAGCUGCGuGaaCCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 102014 0.67 0.934654
Target:  5'- cUCGGCCUacaucgaGGCGCAUUUcgccGaGCCGGCGu -3'
miRNA:   3'- uAGCUGGAg------CUGCGUGAA----C-CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 48880 0.67 0.934654
Target:  5'- -gCGGCCagGugGCA---GGCCAGCGu -3'
miRNA:   3'- uaGCUGGagCugCGUgaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 19728 0.67 0.933666
Target:  5'- gAUCGACCgcgaguuccuaGACGCGCU-GGCCcuccuguauaacAACGa -3'
miRNA:   3'- -UAGCUGGag---------CUGCGUGAaCCGG------------UUGC- -5'
11051 3' -55.2 NC_002794.1 + 556 0.67 0.929622
Target:  5'- -cCGGCCUCGGCGCgGCggUGGCa---- -3'
miRNA:   3'- uaGCUGGAGCUGCG-UGa-ACCGguugc -5'
11051 3' -55.2 NC_002794.1 + 122727 0.67 0.929622
Target:  5'- uUCGACCU-GugGCACacgcaGGCCG-CGg -3'
miRNA:   3'- uAGCUGGAgCugCGUGaa---CCGGUuGC- -5'
11051 3' -55.2 NC_002794.1 + 20735 0.67 0.929622
Target:  5'- --aGACCcugugCGACGCGCUgauccGCCAGCu -3'
miRNA:   3'- uagCUGGa----GCUGCGUGAac---CGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 145914 0.67 0.929622
Target:  5'- aGUCGACCgCGcCGaGCggaggGGCCGGCGa -3'
miRNA:   3'- -UAGCUGGaGCuGCgUGaa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 35552 0.67 0.924356
Target:  5'- -cCGGCgCUCGcgcGCGCGCguggUGGCCcaGGCGu -3'
miRNA:   3'- uaGCUG-GAGC---UGCGUGa---ACCGG--UUGC- -5'
11051 3' -55.2 NC_002794.1 + 93765 0.67 0.918855
Target:  5'- -cCGACCUCuugcgGACGCGCgu-GCUGGCGg -3'
miRNA:   3'- uaGCUGGAG-----CUGCGUGaacCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 76408 0.67 0.918855
Target:  5'- gAUCuuCCUCGACGguCUgcaGGCCaAGCGc -3'
miRNA:   3'- -UAGcuGGAGCUGCguGAa--CCGG-UUGC- -5'
11051 3' -55.2 NC_002794.1 + 12946 0.68 0.907152
Target:  5'- --gGACUUCGugGCG-UUGGCCGuguCGg -3'
miRNA:   3'- uagCUGGAGCugCGUgAACCGGUu--GC- -5'
11051 3' -55.2 NC_002794.1 + 129186 0.68 0.907152
Target:  5'- gAUCGGCCuccgggUCGACGaccgaGC--GGCCGACGg -3'
miRNA:   3'- -UAGCUGG------AGCUGCg----UGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 180368 0.68 0.907152
Target:  5'- -aCGACCggcgCGAgGaCGCUgccGGCCAGCu -3'
miRNA:   3'- uaGCUGGa---GCUgC-GUGAa--CCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 157656 0.68 0.907152
Target:  5'- -aCGAUCcCGACGCGCUggcggcuugGGCCGcuugGCGu -3'
miRNA:   3'- uaGCUGGaGCUGCGUGAa--------CCGGU----UGC- -5'
11051 3' -55.2 NC_002794.1 + 195117 0.68 0.900954
Target:  5'- cUCGugCgcccgCGGCGCGCgcgGGCUcGCGu -3'
miRNA:   3'- uAGCugGa----GCUGCGUGaa-CCGGuUGC- -5'
11051 3' -55.2 NC_002794.1 + 69194 0.68 0.900954
Target:  5'- -cCGGCacgCGGCccGCAgCUUGGCCAGCa -3'
miRNA:   3'- uaGCUGga-GCUG--CGU-GAACCGGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.