miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 69194 0.68 0.900954
Target:  5'- -cCGGCacgCGGCccGCAgCUUGGCCAGCa -3'
miRNA:   3'- uaGCUGga-GCUG--CGU-GAACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 30623 0.68 0.900954
Target:  5'- uGUCGACCggCGAgGCGaa-GGCUAACa -3'
miRNA:   3'- -UAGCUGGa-GCUgCGUgaaCCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 81852 0.68 0.897125
Target:  5'- cUCGACCUccgcagcggacacaaCGACGUGCUcugGGCCA-CGc -3'
miRNA:   3'- uAGCUGGA---------------GCUGCGUGAa--CCGGUuGC- -5'
11051 3' -55.2 NC_002794.1 + 78679 0.68 0.894527
Target:  5'- cUCGGCCgcCGGcCGCAUgugcGGCCGACa -3'
miRNA:   3'- uAGCUGGa-GCU-GCGUGaa--CCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 14515 0.68 0.894527
Target:  5'- -gCGGCgCUCGugGCGCcgcucGGCCAcgGCGc -3'
miRNA:   3'- uaGCUG-GAGCugCGUGaa---CCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 103562 0.68 0.894527
Target:  5'- -aUGGCgUcCGACGC-CgUGGCCGACGa -3'
miRNA:   3'- uaGCUGgA-GCUGCGuGaACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 96866 0.68 0.887875
Target:  5'- cGUCGuguCCUCGACGgACggUGGCgCuACGg -3'
miRNA:   3'- -UAGCu--GGAGCUGCgUGa-ACCG-GuUGC- -5'
11051 3' -55.2 NC_002794.1 + 151299 0.68 0.887875
Target:  5'- -aCGGCUUCGuCGuCAaggUGGCCAACa -3'
miRNA:   3'- uaGCUGGAGCuGC-GUga-ACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 96738 0.68 0.881001
Target:  5'- -aCGACCgcCGGCGCGuCUcgcaagcGGCCGGCGg -3'
miRNA:   3'- uaGCUGGa-GCUGCGU-GAa------CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 22770 0.69 0.873911
Target:  5'- -aCGACCgCGACGCGCguugUGaCCGACc -3'
miRNA:   3'- uaGCUGGaGCUGCGUGa---ACcGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 75456 0.69 0.866608
Target:  5'- cUCGGCCUCGGCGCcccguaccacgGCgccgagacGGCCcGCGu -3'
miRNA:   3'- uAGCUGGAGCUGCG-----------UGaa------CCGGuUGC- -5'
11051 3' -55.2 NC_002794.1 + 106315 0.69 0.859097
Target:  5'- -aCGAgCgCGACGCGCgcgacgGGUCGACGg -3'
miRNA:   3'- uaGCUgGaGCUGCGUGaa----CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 104419 0.69 0.859097
Target:  5'- cUCGGCCUCGGC-CGCc-GGCCcgGACGc -3'
miRNA:   3'- uAGCUGGAGCUGcGUGaaCCGG--UUGC- -5'
11051 3' -55.2 NC_002794.1 + 50571 0.69 0.841875
Target:  5'- uGUCGACa-CGGCGUGCgcggcggcugggUGGCCGGCGc -3'
miRNA:   3'- -UAGCUGgaGCUGCGUGa-----------ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 126245 0.69 0.835384
Target:  5'- -gCGAUCgUGGCGCGCgaGGUCGGCGg -3'
miRNA:   3'- uaGCUGGaGCUGCGUGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 113868 0.69 0.835384
Target:  5'- -cCGGCCa-GGCGCGCUcGGCCGcgGCGc -3'
miRNA:   3'- uaGCUGGagCUGCGUGAaCCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 67577 0.69 0.835384
Target:  5'- -cCGACCggUCGGCGgACUUGGUCAu-- -3'
miRNA:   3'- uaGCUGG--AGCUGCgUGAACCGGUugc -5'
11051 3' -55.2 NC_002794.1 + 73642 0.7 0.827107
Target:  5'- -aCGACCU-GugGCuggUGGCCGACa -3'
miRNA:   3'- uaGCUGGAgCugCGugaACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 70656 0.7 0.818656
Target:  5'- cUUGGCCUCG-UGCGCggcGGCCGccGCGg -3'
miRNA:   3'- uAGCUGGAGCuGCGUGaa-CCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 43030 0.7 0.818656
Target:  5'- cGUCGGCCUCcauCGCGCggcaGGCCGAg- -3'
miRNA:   3'- -UAGCUGGAGcu-GCGUGaa--CCGGUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.