miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 80574 0.7 0.818656
Target:  5'- -cCGugC-CGACGCACg-GGCUGACGg -3'
miRNA:   3'- uaGCugGaGCUGCGUGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 54130 0.7 0.810039
Target:  5'- -aCGAUCUuCGgcACGUugUUGGCCAGCc -3'
miRNA:   3'- uaGCUGGA-GC--UGCGugAACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 53594 0.7 0.810039
Target:  5'- uGUCGGCgUCGGCGuCACcgGGCCGccGCa -3'
miRNA:   3'- -UAGCUGgAGCUGC-GUGaaCCGGU--UGc -5'
11051 3' -55.2 NC_002794.1 + 57580 0.7 0.801263
Target:  5'- -cCGACUUCGAgucacaggcCGCGCgcgUGGCCAcCGa -3'
miRNA:   3'- uaGCUGGAGCU---------GCGUGa--ACCGGUuGC- -5'
11051 3' -55.2 NC_002794.1 + 12375 0.7 0.801263
Target:  5'- -gCGugCUCGccugcCGCGCUcgccUGGCCGACa -3'
miRNA:   3'- uaGCugGAGCu----GCGUGA----ACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 143026 0.7 0.792337
Target:  5'- gGUCGGCCgggUCGACGUGCagGGCCGcCa -3'
miRNA:   3'- -UAGCUGG---AGCUGCGUGaaCCGGUuGc -5'
11051 3' -55.2 NC_002794.1 + 177616 0.71 0.78327
Target:  5'- gGUCGAucgcuCCUCGACG-ACgaGGCCGACc -3'
miRNA:   3'- -UAGCU-----GGAGCUGCgUGaaCCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 13795 0.71 0.78327
Target:  5'- -cCGGCCgucuucgCGACGgGCccGGCCGGCGg -3'
miRNA:   3'- uaGCUGGa------GCUGCgUGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 44387 0.71 0.78327
Target:  5'- -gCGACgCUCGACGCGCccgUuccggucugaccGGCCGGCGc -3'
miRNA:   3'- uaGCUG-GAGCUGCGUGa--A------------CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 81429 0.71 0.774069
Target:  5'- -cCGGCUUCGAgacCGCGCcUGuGCCGACGu -3'
miRNA:   3'- uaGCUGGAGCU---GCGUGaAC-CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 146286 0.71 0.774069
Target:  5'- cGUCGACCUCGucguCGCGCaggUGuugacgggcucGCCGACGc -3'
miRNA:   3'- -UAGCUGGAGCu---GCGUGa--AC-----------CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 57400 0.71 0.774069
Target:  5'- -cCGGCUcCGGCGCcCgcgUGGCCGGCGu -3'
miRNA:   3'- uaGCUGGaGCUGCGuGa--ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 119469 0.71 0.764743
Target:  5'- uUCGACUucuUCGACGU-CUUGGUCGGCu -3'
miRNA:   3'- uAGCUGG---AGCUGCGuGAACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 152942 0.71 0.759092
Target:  5'- cAUCGACCUccucuccggacacgcCGACGC-CUUGGUCGggGCGc -3'
miRNA:   3'- -UAGCUGGA---------------GCUGCGuGAACCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 62142 0.71 0.755302
Target:  5'- -gCGACCUCGACGCGCgcuucUGcGUCuuCGa -3'
miRNA:   3'- uaGCUGGAGCUGCGUGa----AC-CGGuuGC- -5'
11051 3' -55.2 NC_002794.1 + 48614 0.71 0.755302
Target:  5'- cGUCGGCCUCaGACGCGgagcGGCCGuCGg -3'
miRNA:   3'- -UAGCUGGAG-CUGCGUgaa-CCGGUuGC- -5'
11051 3' -55.2 NC_002794.1 + 67075 0.71 0.745754
Target:  5'- -cUGGCCUUGAUGUACgugucggGGCCGACc -3'
miRNA:   3'- uaGCUGGAGCUGCGUGaa-----CCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 11634 0.72 0.726374
Target:  5'- cUCGACCcacagCGACGgGC--GGCCGACGa -3'
miRNA:   3'- uAGCUGGa----GCUGCgUGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 53129 0.72 0.71656
Target:  5'- cGUCGACCgCGGCGCucagcccgGCauaGGCCAGCGc -3'
miRNA:   3'- -UAGCUGGaGCUGCG--------UGaa-CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 31759 0.72 0.706675
Target:  5'- gGUCGAUguaCUCGAUGUGCUccggGGUCAGCGg -3'
miRNA:   3'- -UAGCUG---GAGCUGCGUGAa---CCGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.