Results 81 - 88 of 88 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11051 | 3' | -55.2 | NC_002794.1 | + | 112312 | 0.72 | 0.703697 |
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Target: 5'- -cCGACUUCGGCGCcgacggcggggagcGCgccGGCCGGCGg -3' miRNA: 3'- uaGCUGGAGCUGCG--------------UGaa-CCGGUUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 187463 | 0.74 | 0.615954 |
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Target: 5'- cUCGGCgucgCUCGGCGCGCgccgGGCCGAgGa -3' miRNA: 3'- uAGCUG----GAGCUGCGUGaa--CCGGUUgC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 82465 | 0.74 | 0.585645 |
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Target: 5'- -cCGACCUCGACGC-CgucGGCCuccGCGa -3' miRNA: 3'- uaGCUGGAGCUGCGuGaa-CCGGu--UGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 33020 | 0.75 | 0.555632 |
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Target: 5'- cGUCGuACCUCGACGCcCgcgGaGCCGACGc -3' miRNA: 3'- -UAGC-UGGAGCUGCGuGaa-C-CGGUUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 119669 | 0.75 | 0.542761 |
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Target: 5'- cUCGACCUcCGGCGUccccggcgucuccgGCUgcugGGCCGGCGg -3' miRNA: 3'- uAGCUGGA-GCUGCG--------------UGAa---CCGGUUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 150715 | 0.76 | 0.487656 |
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Target: 5'- gAUCGACUUCGACGUGCggcGGCUGACc -3' miRNA: 3'- -UAGCUGGAGCUGCGUGaa-CCGGUUGc -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 23946 | 0.78 | 0.388884 |
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Target: 5'- -cCGGCCgCGGCGCACUUGGCuccgagcCAGCGg -3' miRNA: 3'- uaGCUGGaGCUGCGUGAACCG-------GUUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 125655 | 0.78 | 0.373332 |
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Target: 5'- uUCuGCCUCGGCGCGCUgaacgggcucUGGCUGACGg -3' miRNA: 3'- uAGcUGGAGCUGCGUGA----------ACCGGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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