Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11051 | 3' | -55.2 | NC_002794.1 | + | 556 | 0.67 | 0.929622 |
Target: 5'- -cCGGCCUCGGCGCgGCggUGGCa---- -3' miRNA: 3'- uaGCUGGAGCUGCG-UGa-ACCGguugc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 11634 | 0.72 | 0.726374 |
Target: 5'- cUCGACCcacagCGACGgGC--GGCCGACGa -3' miRNA: 3'- uAGCUGGa----GCUGCgUGaaCCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 12375 | 0.7 | 0.801263 |
Target: 5'- -gCGugCUCGccugcCGCGCUcgccUGGCCGACa -3' miRNA: 3'- uaGCugGAGCu----GCGUGA----ACCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 12946 | 0.68 | 0.907152 |
Target: 5'- --gGACUUCGugGCG-UUGGCCGuguCGg -3' miRNA: 3'- uagCUGGAGCugCGUgAACCGGUu--GC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 13795 | 0.71 | 0.78327 |
Target: 5'- -cCGGCCgucuucgCGACGgGCccGGCCGGCGg -3' miRNA: 3'- uaGCUGGa------GCUGCgUGaaCCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 14515 | 0.68 | 0.894527 |
Target: 5'- -gCGGCgCUCGugGCGCcgcucGGCCAcgGCGc -3' miRNA: 3'- uaGCUG-GAGCugCGUGaa---CCGGU--UGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 18845 | 0.66 | 0.95481 |
Target: 5'- --aGACCUCGAgCGCGCcgucgccgaucGCCAACGc -3' miRNA: 3'- uagCUGGAGCU-GCGUGaac--------CGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 19728 | 0.67 | 0.933666 |
Target: 5'- gAUCGACCgcgaguuccuaGACGCGCU-GGCCcuccuguauaacAACGa -3' miRNA: 3'- -UAGCUGGag---------CUGCGUGAaCCGG------------UUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 20735 | 0.67 | 0.929622 |
Target: 5'- --aGACCcugugCGACGCGCUgauccGCCAGCu -3' miRNA: 3'- uagCUGGa----GCUGCGUGAac---CGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 22770 | 0.69 | 0.873911 |
Target: 5'- -aCGACCgCGACGCGCguugUGaCCGACc -3' miRNA: 3'- uaGCUGGaGCUGCGUGa---ACcGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 23946 | 0.78 | 0.388884 |
Target: 5'- -cCGGCCgCGGCGCACUUGGCuccgagcCAGCGg -3' miRNA: 3'- uaGCUGGaGCUGCGUGAACCG-------GUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 25120 | 0.67 | 0.939451 |
Target: 5'- gGUCGAgaUCGagcggggcacgcGCGCACgguaGGCCAGCGu -3' miRNA: 3'- -UAGCUggAGC------------UGCGUGaa--CCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 30623 | 0.68 | 0.900954 |
Target: 5'- uGUCGACCggCGAgGCGaa-GGCUAACa -3' miRNA: 3'- -UAGCUGGa-GCUgCGUgaaCCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 31759 | 0.72 | 0.706675 |
Target: 5'- gGUCGAUguaCUCGAUGUGCUccggGGUCAGCGg -3' miRNA: 3'- -UAGCUG---GAGCUGCGUGAa---CCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 33020 | 0.75 | 0.555632 |
Target: 5'- cGUCGuACCUCGACGCcCgcgGaGCCGACGc -3' miRNA: 3'- -UAGC-UGGAGCUGCGuGaa-C-CGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 35552 | 0.67 | 0.924356 |
Target: 5'- -cCGGCgCUCGcgcGCGCGCguggUGGCCcaGGCGu -3' miRNA: 3'- uaGCUG-GAGC---UGCGUGa---ACCGG--UUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 40517 | 0.66 | 0.944016 |
Target: 5'- -aCGGCCgcCGACGCgccgacgggagACgagggGGCCGGCGg -3' miRNA: 3'- uaGCUGGa-GCUGCG-----------UGaa---CCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 43030 | 0.7 | 0.818656 |
Target: 5'- cGUCGGCCUCcauCGCGCggcaGGCCGAg- -3' miRNA: 3'- -UAGCUGGAGcu-GCGUGaa--CCGGUUgc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 44387 | 0.71 | 0.78327 |
Target: 5'- -gCGACgCUCGACGCGCccgUuccggucugaccGGCCGGCGc -3' miRNA: 3'- uaGCUG-GAGCUGCGUGa--A------------CCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 44714 | 0.67 | 0.939451 |
Target: 5'- -gCGACCgCGGCG-ACgucGGCCGGCGc -3' miRNA: 3'- uaGCUGGaGCUGCgUGaa-CCGGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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