miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 556 0.67 0.929622
Target:  5'- -cCGGCCUCGGCGCgGCggUGGCa---- -3'
miRNA:   3'- uaGCUGGAGCUGCG-UGa-ACCGguugc -5'
11051 3' -55.2 NC_002794.1 + 11634 0.72 0.726374
Target:  5'- cUCGACCcacagCGACGgGC--GGCCGACGa -3'
miRNA:   3'- uAGCUGGa----GCUGCgUGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 12375 0.7 0.801263
Target:  5'- -gCGugCUCGccugcCGCGCUcgccUGGCCGACa -3'
miRNA:   3'- uaGCugGAGCu----GCGUGA----ACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 12946 0.68 0.907152
Target:  5'- --gGACUUCGugGCG-UUGGCCGuguCGg -3'
miRNA:   3'- uagCUGGAGCugCGUgAACCGGUu--GC- -5'
11051 3' -55.2 NC_002794.1 + 13795 0.71 0.78327
Target:  5'- -cCGGCCgucuucgCGACGgGCccGGCCGGCGg -3'
miRNA:   3'- uaGCUGGa------GCUGCgUGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 14515 0.68 0.894527
Target:  5'- -gCGGCgCUCGugGCGCcgcucGGCCAcgGCGc -3'
miRNA:   3'- uaGCUG-GAGCugCGUGaa---CCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 18845 0.66 0.95481
Target:  5'- --aGACCUCGAgCGCGCcgucgccgaucGCCAACGc -3'
miRNA:   3'- uagCUGGAGCU-GCGUGaac--------CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 19728 0.67 0.933666
Target:  5'- gAUCGACCgcgaguuccuaGACGCGCU-GGCCcuccuguauaacAACGa -3'
miRNA:   3'- -UAGCUGGag---------CUGCGUGAaCCGG------------UUGC- -5'
11051 3' -55.2 NC_002794.1 + 20735 0.67 0.929622
Target:  5'- --aGACCcugugCGACGCGCUgauccGCCAGCu -3'
miRNA:   3'- uagCUGGa----GCUGCGUGAac---CGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 22770 0.69 0.873911
Target:  5'- -aCGACCgCGACGCGCguugUGaCCGACc -3'
miRNA:   3'- uaGCUGGaGCUGCGUGa---ACcGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 23946 0.78 0.388884
Target:  5'- -cCGGCCgCGGCGCACUUGGCuccgagcCAGCGg -3'
miRNA:   3'- uaGCUGGaGCUGCGUGAACCG-------GUUGC- -5'
11051 3' -55.2 NC_002794.1 + 25120 0.67 0.939451
Target:  5'- gGUCGAgaUCGagcggggcacgcGCGCACgguaGGCCAGCGu -3'
miRNA:   3'- -UAGCUggAGC------------UGCGUGaa--CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 30623 0.68 0.900954
Target:  5'- uGUCGACCggCGAgGCGaa-GGCUAACa -3'
miRNA:   3'- -UAGCUGGa-GCUgCGUgaaCCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 31759 0.72 0.706675
Target:  5'- gGUCGAUguaCUCGAUGUGCUccggGGUCAGCGg -3'
miRNA:   3'- -UAGCUG---GAGCUGCGUGAa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 33020 0.75 0.555632
Target:  5'- cGUCGuACCUCGACGCcCgcgGaGCCGACGc -3'
miRNA:   3'- -UAGC-UGGAGCUGCGuGaa-C-CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 35552 0.67 0.924356
Target:  5'- -cCGGCgCUCGcgcGCGCGCguggUGGCCcaGGCGu -3'
miRNA:   3'- uaGCUG-GAGC---UGCGUGa---ACCGG--UUGC- -5'
11051 3' -55.2 NC_002794.1 + 40517 0.66 0.944016
Target:  5'- -aCGGCCgcCGACGCgccgacgggagACgagggGGCCGGCGg -3'
miRNA:   3'- uaGCUGGa-GCUGCG-----------UGaa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 43030 0.7 0.818656
Target:  5'- cGUCGGCCUCcauCGCGCggcaGGCCGAg- -3'
miRNA:   3'- -UAGCUGGAGcu-GCGUGaa--CCGGUUgc -5'
11051 3' -55.2 NC_002794.1 + 44387 0.71 0.78327
Target:  5'- -gCGACgCUCGACGCGCccgUuccggucugaccGGCCGGCGc -3'
miRNA:   3'- uaGCUG-GAGCUGCGUGa--A------------CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 44714 0.67 0.939451
Target:  5'- -gCGACCgCGGCG-ACgucGGCCGGCGc -3'
miRNA:   3'- uaGCUGGaGCUGCgUGaa-CCGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.