miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 45693 0.66 0.959995
Target:  5'- --gGGCCUCGACGUcggacACguuauugUGGuCCAACa -3'
miRNA:   3'- uagCUGGAGCUGCG-----UGa------ACC-GGUUGc -5'
11051 3' -55.2 NC_002794.1 + 48052 0.66 0.956336
Target:  5'- -gCGugCUgGGCacgGCGCUgauggccGGCCAGCGg -3'
miRNA:   3'- uaGCugGAgCUG---CGUGAa------CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 48614 0.71 0.755302
Target:  5'- cGUCGGCCUCaGACGCGgagcGGCCGuCGg -3'
miRNA:   3'- -UAGCUGGAG-CUGCGUgaa-CCGGUuGC- -5'
11051 3' -55.2 NC_002794.1 + 48880 0.67 0.934654
Target:  5'- -gCGGCCagGugGCA---GGCCAGCGu -3'
miRNA:   3'- uaGCUGGagCugCGUgaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 50571 0.69 0.841875
Target:  5'- uGUCGACa-CGGCGUGCgcggcggcugggUGGCCGGCGc -3'
miRNA:   3'- -UAGCUGgaGCUGCGUGa-----------ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 51976 0.66 0.94835
Target:  5'- -cCGGCaUCGugGCGCUcGGCCGc-- -3'
miRNA:   3'- uaGCUGgAGCugCGUGAaCCGGUugc -5'
11051 3' -55.2 NC_002794.1 + 53129 0.72 0.71656
Target:  5'- cGUCGACCgCGGCGCucagcccgGCauaGGCCAGCGc -3'
miRNA:   3'- -UAGCUGGaGCUGCG--------UGaa-CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 53594 0.7 0.810039
Target:  5'- uGUCGGCgUCGGCGuCACcgGGCCGccGCa -3'
miRNA:   3'- -UAGCUGgAGCUGC-GUGaaCCGGU--UGc -5'
11051 3' -55.2 NC_002794.1 + 54130 0.7 0.810039
Target:  5'- -aCGAUCUuCGgcACGUugUUGGCCAGCc -3'
miRNA:   3'- uaGCUGGA-GC--UGCGugAACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 57400 0.71 0.774069
Target:  5'- -cCGGCUcCGGCGCcCgcgUGGCCGGCGu -3'
miRNA:   3'- uaGCUGGaGCUGCGuGa--ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 57580 0.7 0.801263
Target:  5'- -cCGACUUCGAgucacaggcCGCGCgcgUGGCCAcCGa -3'
miRNA:   3'- uaGCUGGAGCU---------GCGUGa--ACCGGUuGC- -5'
11051 3' -55.2 NC_002794.1 + 58374 0.66 0.956336
Target:  5'- -cCGACUUCcaggaGGCGCGCggGcGCCAGCu -3'
miRNA:   3'- uaGCUGGAG-----CUGCGUGaaC-CGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 62142 0.71 0.755302
Target:  5'- -gCGACCUCGACGCGCgcuucUGcGUCuuCGa -3'
miRNA:   3'- uaGCUGGAGCUGCGUGa----AC-CGGuuGC- -5'
11051 3' -55.2 NC_002794.1 + 67075 0.71 0.745754
Target:  5'- -cUGGCCUUGAUGUACgugucggGGCCGACc -3'
miRNA:   3'- uaGCUGGAGCUGCGUGaa-----CCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 67577 0.69 0.835384
Target:  5'- -cCGACCggUCGGCGgACUUGGUCAu-- -3'
miRNA:   3'- uaGCUGG--AGCUGCgUGAACCGGUugc -5'
11051 3' -55.2 NC_002794.1 + 69194 0.68 0.900954
Target:  5'- -cCGGCacgCGGCccGCAgCUUGGCCAGCa -3'
miRNA:   3'- uaGCUGga-GCUG--CGU-GAACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 70656 0.7 0.818656
Target:  5'- cUUGGCCUCG-UGCGCggcGGCCGccGCGg -3'
miRNA:   3'- uAGCUGGAGCuGCGUGaa-CCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 73278 0.66 0.952455
Target:  5'- -cCGACCgcggCGACGCGCccGGUCu-CGg -3'
miRNA:   3'- uaGCUGGa---GCUGCGUGaaCCGGuuGC- -5'
11051 3' -55.2 NC_002794.1 + 73642 0.7 0.827107
Target:  5'- -aCGACCU-GugGCuggUGGCCGACa -3'
miRNA:   3'- uaGCUGGAgCugCGugaACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 75456 0.69 0.866608
Target:  5'- cUCGGCCUCGGCGCcccguaccacgGCgccgagacGGCCcGCGu -3'
miRNA:   3'- uAGCUGGAGCUGCG-----------UGaa------CCGGuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.