miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 112312 0.72 0.703697
Target:  5'- -cCGACUUCGGCGCcgacggcggggagcGCgccGGCCGGCGg -3'
miRNA:   3'- uaGCUGGAGCUGCG--------------UGaa-CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 113868 0.69 0.835384
Target:  5'- -cCGGCCa-GGCGCGCUcGGCCGcgGCGc -3'
miRNA:   3'- uaGCUGGagCUGCGUGAaCCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 119469 0.71 0.764743
Target:  5'- uUCGACUucuUCGACGU-CUUGGUCGGCu -3'
miRNA:   3'- uAGCUGG---AGCUGCGuGAACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 119669 0.75 0.542761
Target:  5'- cUCGACCUcCGGCGUccccggcgucuccgGCUgcugGGCCGGCGg -3'
miRNA:   3'- uAGCUGGA-GCUGCG--------------UGAa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 120963 0.67 0.939451
Target:  5'- cGUCGACCUCGGC-Cc---GGCCuGCGa -3'
miRNA:   3'- -UAGCUGGAGCUGcGugaaCCGGuUGC- -5'
11051 3' -55.2 NC_002794.1 + 122727 0.67 0.929622
Target:  5'- uUCGACCU-GugGCACacgcaGGCCG-CGg -3'
miRNA:   3'- uAGCUGGAgCugCGUGaa---CCGGUuGC- -5'
11051 3' -55.2 NC_002794.1 + 125655 0.78 0.373332
Target:  5'- uUCuGCCUCGGCGCGCUgaacgggcucUGGCUGACGg -3'
miRNA:   3'- uAGcUGGAGCUGCGUGA----------ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 126245 0.69 0.835384
Target:  5'- -gCGAUCgUGGCGCGCgaGGUCGGCGg -3'
miRNA:   3'- uaGCUGGaGCUGCGUGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 129186 0.68 0.907152
Target:  5'- gAUCGGCCuccgggUCGACGaccgaGC--GGCCGACGg -3'
miRNA:   3'- -UAGCUGG------AGCUGCg----UGaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 135483 0.66 0.956336
Target:  5'- -aCGccGCCgUCGACGCGCgcgGGcCCGAUGc -3'
miRNA:   3'- uaGC--UGG-AGCUGCGUGaa-CC-GGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 141805 0.68 0.900954
Target:  5'- gGUCGGCCUCGGacaGcCGgUUGGaCGACGa -3'
miRNA:   3'- -UAGCUGGAGCUg--C-GUgAACCgGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 143026 0.7 0.792337
Target:  5'- gGUCGGCCgggUCGACGUGCagGGCCGcCa -3'
miRNA:   3'- -UAGCUGG---AGCUGCGUGaaCCGGUuGc -5'
11051 3' -55.2 NC_002794.1 + 143580 0.66 0.959995
Target:  5'- -cCGuCCUCGGCgGCGCUgUGGUCGAa- -3'
miRNA:   3'- uaGCuGGAGCUG-CGUGA-ACCGGUUgc -5'
11051 3' -55.2 NC_002794.1 + 145914 0.67 0.929622
Target:  5'- aGUCGACCgCGcCGaGCggaggGGCCGGCGa -3'
miRNA:   3'- -UAGCUGGaGCuGCgUGaa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 146286 0.71 0.774069
Target:  5'- cGUCGACCUCGucguCGCGCaggUGuugacgggcucGCCGACGc -3'
miRNA:   3'- -UAGCUGGAGCu---GCGUGa--AC-----------CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 146684 0.67 0.934654
Target:  5'- -aCG-UCUCGGCGCuCgaGGCCGACu -3'
miRNA:   3'- uaGCuGGAGCUGCGuGaaCCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 150715 0.76 0.487656
Target:  5'- gAUCGACUUCGACGUGCggcGGCUGACc -3'
miRNA:   3'- -UAGCUGGAGCUGCGUGaa-CCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 151299 0.68 0.887875
Target:  5'- -aCGGCUUCGuCGuCAaggUGGCCAACa -3'
miRNA:   3'- uaGCUGGAGCuGC-GUga-ACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 152942 0.71 0.759092
Target:  5'- cAUCGACCUccucuccggacacgcCGACGC-CUUGGUCGggGCGc -3'
miRNA:   3'- -UAGCUGGA---------------GCUGCGuGAACCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 154393 0.66 0.959995
Target:  5'- -aCGcCCguucgCGugGUGCcggUGGCCAGCGc -3'
miRNA:   3'- uaGCuGGa----GCugCGUGa--ACCGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.