Results 81 - 88 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11051 | 3' | -55.2 | NC_002794.1 | + | 157656 | 0.68 | 0.907152 |
Target: 5'- -aCGAUCcCGACGCGCUggcggcuugGGCCGcuugGCGu -3' miRNA: 3'- uaGCUGGaGCUGCGUGAa--------CCGGU----UGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 177616 | 0.71 | 0.78327 |
Target: 5'- gGUCGAucgcuCCUCGACG-ACgaGGCCGACc -3' miRNA: 3'- -UAGCU-----GGAGCUGCgUGaaCCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 180368 | 0.68 | 0.907152 |
Target: 5'- -aCGACCggcgCGAgGaCGCUgccGGCCAGCu -3' miRNA: 3'- uaGCUGGa---GCUgC-GUGAa--CCGGUUGc -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 182195 | 0.66 | 0.959995 |
Target: 5'- --gGGCCUCGGCGCcggcgucgcgccACggGGCUccGACGg -3' miRNA: 3'- uagCUGGAGCUGCG------------UGaaCCGG--UUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 187463 | 0.74 | 0.615954 |
Target: 5'- cUCGGCgucgCUCGGCGCGCgccgGGCCGAgGa -3' miRNA: 3'- uAGCUG----GAGCUGCGUGaa--CCGGUUgC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 188322 | 0.66 | 0.959995 |
Target: 5'- cGUCGuCCUCGuCGC-CgccGCCGGCGg -3' miRNA: 3'- -UAGCuGGAGCuGCGuGaacCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 189391 | 0.66 | 0.95481 |
Target: 5'- -cUGugCUCGGC-CACguaguccgccagGGCCAGCGg -3' miRNA: 3'- uaGCugGAGCUGcGUGaa----------CCGGUUGC- -5' |
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11051 | 3' | -55.2 | NC_002794.1 | + | 195117 | 0.68 | 0.900954 |
Target: 5'- cUCGugCgcccgCGGCGCGCgcgGGCUcGCGu -3' miRNA: 3'- uAGCugGa----GCUGCGUGaa-CCGGuUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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