miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 195117 0.68 0.900954
Target:  5'- cUCGugCgcccgCGGCGCGCgcgGGCUcGCGu -3'
miRNA:   3'- uAGCugGa----GCUGCGUGaa-CCGGuUGC- -5'
11051 3' -55.2 NC_002794.1 + 189391 0.66 0.95481
Target:  5'- -cUGugCUCGGC-CACguaguccgccagGGCCAGCGg -3'
miRNA:   3'- uaGCugGAGCUGcGUGaa----------CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 188322 0.66 0.959995
Target:  5'- cGUCGuCCUCGuCGC-CgccGCCGGCGg -3'
miRNA:   3'- -UAGCuGGAGCuGCGuGaacCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 187463 0.74 0.615954
Target:  5'- cUCGGCgucgCUCGGCGCGCgccgGGCCGAgGa -3'
miRNA:   3'- uAGCUG----GAGCUGCGUGaa--CCGGUUgC- -5'
11051 3' -55.2 NC_002794.1 + 182195 0.66 0.959995
Target:  5'- --gGGCCUCGGCGCcggcgucgcgccACggGGCUccGACGg -3'
miRNA:   3'- uagCUGGAGCUGCG------------UGaaCCGG--UUGC- -5'
11051 3' -55.2 NC_002794.1 + 180368 0.68 0.907152
Target:  5'- -aCGACCggcgCGAgGaCGCUgccGGCCAGCu -3'
miRNA:   3'- uaGCUGGa---GCUgC-GUGAa--CCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 177616 0.71 0.78327
Target:  5'- gGUCGAucgcuCCUCGACG-ACgaGGCCGACc -3'
miRNA:   3'- -UAGCU-----GGAGCUGCgUGaaCCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 157656 0.68 0.907152
Target:  5'- -aCGAUCcCGACGCGCUggcggcuugGGCCGcuugGCGu -3'
miRNA:   3'- uaGCUGGaGCUGCGUGAa--------CCGGU----UGC- -5'
11051 3' -55.2 NC_002794.1 + 154393 0.66 0.959995
Target:  5'- -aCGcCCguucgCGugGUGCcggUGGCCAGCGc -3'
miRNA:   3'- uaGCuGGa----GCugCGUGa--ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 152942 0.71 0.759092
Target:  5'- cAUCGACCUccucuccggacacgcCGACGC-CUUGGUCGggGCGc -3'
miRNA:   3'- -UAGCUGGA---------------GCUGCGuGAACCGGU--UGC- -5'
11051 3' -55.2 NC_002794.1 + 151299 0.68 0.887875
Target:  5'- -aCGGCUUCGuCGuCAaggUGGCCAACa -3'
miRNA:   3'- uaGCUGGAGCuGC-GUga-ACCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 150715 0.76 0.487656
Target:  5'- gAUCGACUUCGACGUGCggcGGCUGACc -3'
miRNA:   3'- -UAGCUGGAGCUGCGUGaa-CCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 146684 0.67 0.934654
Target:  5'- -aCG-UCUCGGCGCuCgaGGCCGACu -3'
miRNA:   3'- uaGCuGGAGCUGCGuGaaCCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 146286 0.71 0.774069
Target:  5'- cGUCGACCUCGucguCGCGCaggUGuugacgggcucGCCGACGc -3'
miRNA:   3'- -UAGCUGGAGCu---GCGUGa--AC-----------CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 145914 0.67 0.929622
Target:  5'- aGUCGACCgCGcCGaGCggaggGGCCGGCGa -3'
miRNA:   3'- -UAGCUGGaGCuGCgUGaa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 143580 0.66 0.959995
Target:  5'- -cCGuCCUCGGCgGCGCUgUGGUCGAa- -3'
miRNA:   3'- uaGCuGGAGCUG-CGUGA-ACCGGUUgc -5'
11051 3' -55.2 NC_002794.1 + 143026 0.7 0.792337
Target:  5'- gGUCGGCCgggUCGACGUGCagGGCCGcCa -3'
miRNA:   3'- -UAGCUGG---AGCUGCGUGaaCCGGUuGc -5'
11051 3' -55.2 NC_002794.1 + 141805 0.68 0.900954
Target:  5'- gGUCGGCCUCGGacaGcCGgUUGGaCGACGa -3'
miRNA:   3'- -UAGCUGGAGCUg--C-GUgAACCgGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 135483 0.66 0.956336
Target:  5'- -aCGccGCCgUCGACGCGCgcgGGcCCGAUGc -3'
miRNA:   3'- uaGC--UGG-AGCUGCGUGaa-CC-GGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 129186 0.68 0.907152
Target:  5'- gAUCGGCCuccgggUCGACGaccgaGC--GGCCGACGg -3'
miRNA:   3'- -UAGCUGG------AGCUGCg----UGaaCCGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.