miRNA display CGI


Results 61 - 80 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 3' -55.2 NC_002794.1 + 53594 0.7 0.810039
Target:  5'- uGUCGGCgUCGGCGuCACcgGGCCGccGCa -3'
miRNA:   3'- -UAGCUGgAGCUGC-GUGaaCCGGU--UGc -5'
11051 3' -55.2 NC_002794.1 + 53129 0.72 0.71656
Target:  5'- cGUCGACCgCGGCGCucagcccgGCauaGGCCAGCGc -3'
miRNA:   3'- -UAGCUGGaGCUGCG--------UGaa-CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 51976 0.66 0.94835
Target:  5'- -cCGGCaUCGugGCGCUcGGCCGc-- -3'
miRNA:   3'- uaGCUGgAGCugCGUGAaCCGGUugc -5'
11051 3' -55.2 NC_002794.1 + 50571 0.69 0.841875
Target:  5'- uGUCGACa-CGGCGUGCgcggcggcugggUGGCCGGCGc -3'
miRNA:   3'- -UAGCUGgaGCUGCGUGa-----------ACCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 48880 0.67 0.934654
Target:  5'- -gCGGCCagGugGCA---GGCCAGCGu -3'
miRNA:   3'- uaGCUGGagCugCGUgaaCCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 48614 0.71 0.755302
Target:  5'- cGUCGGCCUCaGACGCGgagcGGCCGuCGg -3'
miRNA:   3'- -UAGCUGGAG-CUGCGUgaa-CCGGUuGC- -5'
11051 3' -55.2 NC_002794.1 + 48052 0.66 0.956336
Target:  5'- -gCGugCUgGGCacgGCGCUgauggccGGCCAGCGg -3'
miRNA:   3'- uaGCugGAgCUG---CGUGAa------CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 45693 0.66 0.959995
Target:  5'- --gGGCCUCGACGUcggacACguuauugUGGuCCAACa -3'
miRNA:   3'- uagCUGGAGCUGCG-----UGa------ACC-GGUUGc -5'
11051 3' -55.2 NC_002794.1 + 44714 0.67 0.939451
Target:  5'- -gCGACCgCGGCG-ACgucGGCCGGCGc -3'
miRNA:   3'- uaGCUGGaGCUGCgUGaa-CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 44387 0.71 0.78327
Target:  5'- -gCGACgCUCGACGCGCccgUuccggucugaccGGCCGGCGc -3'
miRNA:   3'- uaGCUG-GAGCUGCGUGa--A------------CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 43030 0.7 0.818656
Target:  5'- cGUCGGCCUCcauCGCGCggcaGGCCGAg- -3'
miRNA:   3'- -UAGCUGGAGcu-GCGUGaa--CCGGUUgc -5'
11051 3' -55.2 NC_002794.1 + 40517 0.66 0.944016
Target:  5'- -aCGGCCgcCGACGCgccgacgggagACgagggGGCCGGCGg -3'
miRNA:   3'- uaGCUGGa-GCUGCG-----------UGaa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 35552 0.67 0.924356
Target:  5'- -cCGGCgCUCGcgcGCGCGCguggUGGCCcaGGCGu -3'
miRNA:   3'- uaGCUG-GAGC---UGCGUGa---ACCGG--UUGC- -5'
11051 3' -55.2 NC_002794.1 + 33020 0.75 0.555632
Target:  5'- cGUCGuACCUCGACGCcCgcgGaGCCGACGc -3'
miRNA:   3'- -UAGC-UGGAGCUGCGuGaa-C-CGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 31759 0.72 0.706675
Target:  5'- gGUCGAUguaCUCGAUGUGCUccggGGUCAGCGg -3'
miRNA:   3'- -UAGCUG---GAGCUGCGUGAa---CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 30623 0.68 0.900954
Target:  5'- uGUCGACCggCGAgGCGaa-GGCUAACa -3'
miRNA:   3'- -UAGCUGGa-GCUgCGUgaaCCGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 25120 0.67 0.939451
Target:  5'- gGUCGAgaUCGagcggggcacgcGCGCACgguaGGCCAGCGu -3'
miRNA:   3'- -UAGCUggAGC------------UGCGUGaa--CCGGUUGC- -5'
11051 3' -55.2 NC_002794.1 + 23946 0.78 0.388884
Target:  5'- -cCGGCCgCGGCGCACUUGGCuccgagcCAGCGg -3'
miRNA:   3'- uaGCUGGaGCUGCGUGAACCG-------GUUGC- -5'
11051 3' -55.2 NC_002794.1 + 22770 0.69 0.873911
Target:  5'- -aCGACCgCGACGCGCguugUGaCCGACc -3'
miRNA:   3'- uaGCUGGaGCUGCGUGa---ACcGGUUGc -5'
11051 3' -55.2 NC_002794.1 + 20735 0.67 0.929622
Target:  5'- --aGACCcugugCGACGCGCUgauccGCCAGCu -3'
miRNA:   3'- uagCUGGa----GCUGCGUGAac---CGGUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.