Results 81 - 88 of 88 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11051 | 3' | -55.2 | NC_002794.1 | + | 19728 | 0.67 | 0.933666 |
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Target: 5'- gAUCGACCgcgaguuccuaGACGCGCU-GGCCcuccuguauaacAACGa -3' miRNA: 3'- -UAGCUGGag---------CUGCGUGAaCCGG------------UUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 48880 | 0.67 | 0.934654 |
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Target: 5'- -gCGGCCagGugGCA---GGCCAGCGu -3' miRNA: 3'- uaGCUGGagCugCGUgaaCCGGUUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 145914 | 0.67 | 0.929622 |
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Target: 5'- aGUCGACCgCGcCGaGCggaggGGCCGGCGa -3' miRNA: 3'- -UAGCUGGaGCuGCgUGaa---CCGGUUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 20735 | 0.67 | 0.929622 |
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Target: 5'- --aGACCcugugCGACGCGCUgauccGCCAGCu -3' miRNA: 3'- uagCUGGa----GCUGCGUGAac---CGGUUGc -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 35552 | 0.67 | 0.924356 |
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Target: 5'- -cCGGCgCUCGcgcGCGCGCguggUGGCCcaGGCGu -3' miRNA: 3'- uaGCUG-GAGC---UGCGUGa---ACCGG--UUGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 122727 | 0.67 | 0.929622 |
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Target: 5'- uUCGACCU-GugGCACacgcaGGCCG-CGg -3' miRNA: 3'- uAGCUGGAgCugCGUGaa---CCGGUuGC- -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 556 | 0.67 | 0.929622 |
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Target: 5'- -cCGGCCUCGGCGCgGCggUGGCa---- -3' miRNA: 3'- uaGCUGGAGCUGCG-UGa-ACCGguugc -5' |
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| 11051 | 3' | -55.2 | NC_002794.1 | + | 103562 | 0.68 | 0.894527 |
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Target: 5'- -aUGGCgUcCGACGC-CgUGGCCGACGa -3' miRNA: 3'- uaGCUGgA-GCUGCGuGaACCGGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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