miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 5' -65.3 NC_002794.1 + 103572 0.66 0.622262
Target:  5'- -aCGCCguGGCCGacgaGCaGCGGUCGGgCa -3'
miRNA:   3'- ggGCGG--UCGGCg---CGcCGCUAGCCgGc -5'
11051 5' -65.3 NC_002794.1 + 48514 0.66 0.622262
Target:  5'- gCCCGaucgacguaCAGCaCGCacaGGCucgGGUCGGCCGa -3'
miRNA:   3'- -GGGCg--------GUCG-GCGcg-CCG---CUAGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 72269 0.66 0.622262
Target:  5'- uUCCGCgcggaagaAGCCGCGaaagcgGGCGAUCGcGUCc -3'
miRNA:   3'- -GGGCGg-------UCGGCGCg-----CCGCUAGC-CGGc -5'
11051 5' -65.3 NC_002794.1 + 87364 0.66 0.622262
Target:  5'- gCgGCgAGCgGCGUucugGGCGGcgCGGCCa -3'
miRNA:   3'- gGgCGgUCGgCGCG----CCGCUa-GCCGGc -5'
11051 5' -65.3 NC_002794.1 + 90263 0.66 0.622262
Target:  5'- uCCgCGCgAGUgguuuuCGCGCGcGCGGUCGagcucGCCGa -3'
miRNA:   3'- -GG-GCGgUCG------GCGCGC-CGCUAGC-----CGGC- -5'
11051 5' -65.3 NC_002794.1 + 48872 0.66 0.622262
Target:  5'- cCCCGUCGGCgGCcagGUGGCa---GGCCa -3'
miRNA:   3'- -GGGCGGUCGgCG---CGCCGcuagCCGGc -5'
11051 5' -65.3 NC_002794.1 + 89591 0.66 0.612916
Target:  5'- gCCGUCgAGCCGCGCGaucccgGGUCGGUuuCGg -3'
miRNA:   3'- gGGCGG-UCGGCGCGCcg----CUAGCCG--GC- -5'
11051 5' -65.3 NC_002794.1 + 32910 0.66 0.612916
Target:  5'- ---aCCAGUCGgGCGGCagcaGGUCGGCgGg -3'
miRNA:   3'- gggcGGUCGGCgCGCCG----CUAGCCGgC- -5'
11051 5' -65.3 NC_002794.1 + 104088 0.66 0.612916
Target:  5'- gCCCGUgcagaucgagCAGCUGCGUGaacucGCGcagaaaGUCGGCCa -3'
miRNA:   3'- -GGGCG----------GUCGGCGCGC-----CGC------UAGCCGGc -5'
11051 5' -65.3 NC_002794.1 + 101637 0.66 0.612916
Target:  5'- gUCCGCgAGCgUGgGCgGGCGggCGGCgGu -3'
miRNA:   3'- -GGGCGgUCG-GCgCG-CCGCuaGCCGgC- -5'
11051 5' -65.3 NC_002794.1 + 138132 0.66 0.612916
Target:  5'- gUCGCCGGUcuCGgGCGGCGGUuucuugcgCaGCCGg -3'
miRNA:   3'- gGGCGGUCG--GCgCGCCGCUA--------GcCGGC- -5'
11051 5' -65.3 NC_002794.1 + 113153 0.66 0.612916
Target:  5'- gCgCGUCAGCguguaGCGCGcGCGggCGGCgGc -3'
miRNA:   3'- -GgGCGGUCGg----CGCGC-CGCuaGCCGgC- -5'
11051 5' -65.3 NC_002794.1 + 148545 0.66 0.612916
Target:  5'- cCUCGUCGGCUGCGCG-CGGcucuuucugcUCGGaCUGa -3'
miRNA:   3'- -GGGCGGUCGGCGCGCcGCU----------AGCC-GGC- -5'
11051 5' -65.3 NC_002794.1 + 14254 0.66 0.612916
Target:  5'- aCCGCCGGCuCGacccCGaccgaGGUGuUCGGCUGg -3'
miRNA:   3'- gGGCGGUCG-GC----GCg----CCGCuAGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 18266 0.66 0.612916
Target:  5'- aCCGCgAGauGCGCGGCGc-CGaGCCu -3'
miRNA:   3'- gGGCGgUCggCGCGCCGCuaGC-CGGc -5'
11051 5' -65.3 NC_002794.1 + 131271 0.66 0.612916
Target:  5'- aCCGCCGGCaccacCGC-CGGCGccGUCGcuccGCCGc -3'
miRNA:   3'- gGGCGGUCG-----GCGcGCCGC--UAGC----CGGC- -5'
11051 5' -65.3 NC_002794.1 + 120850 0.66 0.612916
Target:  5'- cCCUGCgCGGCCGuCGUccaGCGccUCGGCUGg -3'
miRNA:   3'- -GGGCG-GUCGGC-GCGc--CGCu-AGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 105510 0.66 0.612916
Target:  5'- gCCGCCGGUCGCGCcguccgaagcGGacgugaGAUcCGGCgGc -3'
miRNA:   3'- gGGCGGUCGGCGCG----------CCg-----CUA-GCCGgC- -5'
11051 5' -65.3 NC_002794.1 + 183722 0.66 0.612916
Target:  5'- aCCGUCAGCCcgcacGCGCccaGCagGAUCaGGCCGc -3'
miRNA:   3'- gGGCGGUCGG-----CGCGc--CG--CUAG-CCGGC- -5'
11051 5' -65.3 NC_002794.1 + 33811 0.66 0.611049
Target:  5'- uUCUGCCAGCUGCucaacacguaccCGGUGAa-GGCCGu -3'
miRNA:   3'- -GGGCGGUCGGCGc-----------GCCGCUagCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.