miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 5' -65.3 NC_002794.1 + 44703 0.84 0.040757
Target:  5'- gCCGcCCGGCCGCgaccGCGGCGAcgUCGGCCGg -3'
miRNA:   3'- gGGC-GGUCGGCG----CGCCGCU--AGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 146993 0.83 0.053551
Target:  5'- gCCGCCGGCCGaCGuCGGCGGcggCGGCCGc -3'
miRNA:   3'- gGGCGGUCGGC-GC-GCCGCUa--GCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 18803 0.83 0.054892
Target:  5'- cCCCGCCGGCCaacGgGuCGGCGAccUCGGCCGg -3'
miRNA:   3'- -GGGCGGUCGG---CgC-GCCGCU--AGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 75371 0.81 0.073736
Target:  5'- aCCCGCCgcGGCCG-GCGGCGG-CGGCCu -3'
miRNA:   3'- -GGGCGG--UCGGCgCGCCGCUaGCCGGc -5'
11051 5' -65.3 NC_002794.1 + 99909 0.8 0.083507
Target:  5'- aCCGCCAccggaucacGCCGUGCGGCGuggucuugcggcuguUCGGCCGg -3'
miRNA:   3'- gGGCGGU---------CGGCGCGCCGCu--------------AGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 49397 0.8 0.085355
Target:  5'- gCCGCCgucggccacggcGGCCGCgGCGGCGG-CGGCCGu -3'
miRNA:   3'- gGGCGG------------UCGGCG-CGCCGCUaGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 61538 0.79 0.101113
Target:  5'- gCCGCCGcgaagacgacGCCGcCGCGGCGG-CGGCCGc -3'
miRNA:   3'- gGGCGGU----------CGGC-GCGCCGCUaGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 149275 0.79 0.106097
Target:  5'- cCCCGCCGGCgGCGCGGCGGcUCGcUCa -3'
miRNA:   3'- -GGGCGGUCGgCGCGCCGCU-AGCcGGc -5'
11051 5' -65.3 NC_002794.1 + 151700 0.78 0.114008
Target:  5'- cCCCGCCGGCCgaGCGCGccagucgcGCGAaggacgucgUCGGCCGc -3'
miRNA:   3'- -GGGCGGUCGG--CGCGC--------CGCU---------AGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 32294 0.78 0.116765
Target:  5'- gCCGCC-GCCGcCGCGGCGGcCGcGCCGg -3'
miRNA:   3'- gGGCGGuCGGC-GCGCCGCUaGC-CGGC- -5'
11051 5' -65.3 NC_002794.1 + 186626 0.78 0.119585
Target:  5'- cUCCGCCAGCCgacacagcccGCGCGG--GUCGGCCGc -3'
miRNA:   3'- -GGGCGGUCGG----------CGCGCCgcUAGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 108462 0.78 0.122467
Target:  5'- gCCCGCCGGCaCGgGCcgaggGGCGAcCGGCCa -3'
miRNA:   3'- -GGGCGGUCG-GCgCG-----CCGCUaGCCGGc -5'
11051 5' -65.3 NC_002794.1 + 100314 0.77 0.125414
Target:  5'- gCCGCUGGCaCGCGCGGcCGGcgcaCGGCCGg -3'
miRNA:   3'- gGGCGGUCG-GCGCGCC-GCUa---GCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 38555 0.77 0.128427
Target:  5'- cCCCGCCAGaagcCCGC-CGGCGccucgacggaGUCGGCCGc -3'
miRNA:   3'- -GGGCGGUC----GGCGcGCCGC----------UAGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 61879 0.77 0.128427
Target:  5'- gCCGUCGucggcGCCGCGCGGCGAgcgCGGCg- -3'
miRNA:   3'- gGGCGGU-----CGGCGCGCCGCUa--GCCGgc -5'
11051 5' -65.3 NC_002794.1 + 37743 0.77 0.128427
Target:  5'- gCCGCCGGCgGCGgcgcggcggcgcCGGCGGgagCGGCCGu -3'
miRNA:   3'- gGGCGGUCGgCGC------------GCCGCUa--GCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 82557 0.77 0.131507
Target:  5'- uCCCGCCGGCCcaGC-CGGCGA--GGCCGa -3'
miRNA:   3'- -GGGCGGUCGG--CGcGCCGCUagCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 19315 0.77 0.144516
Target:  5'- aCCGCCcacGCCGCGCuGGCGAcccgCGcGCCGg -3'
miRNA:   3'- gGGCGGu--CGGCGCG-CCGCUa---GC-CGGC- -5'
11051 5' -65.3 NC_002794.1 + 184464 0.76 0.147948
Target:  5'- gCCCGCgGGCCGCGCgaacGGCGcgCGGggccCCGg -3'
miRNA:   3'- -GGGCGgUCGGCGCG----CCGCuaGCC----GGC- -5'
11051 5' -65.3 NC_002794.1 + 184570 0.76 0.147948
Target:  5'- aCgCGCC-GCCGCgGCGGCGG-CGGCCa -3'
miRNA:   3'- -GgGCGGuCGGCG-CGCCGCUaGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.