miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11051 5' -65.3 NC_002794.1 + 258 0.7 0.356232
Target:  5'- aCUGCC-GCCGCGCGcGCGGacgcgaggacggCGGCCc -3'
miRNA:   3'- gGGCGGuCGGCGCGC-CGCUa-----------GCCGGc -5'
11051 5' -65.3 NC_002794.1 + 550 0.67 0.503192
Target:  5'- uCuuGcCCGGCCucgGCGCGGCGGU-GGCa- -3'
miRNA:   3'- -GggC-GGUCGG---CGCGCCGCUAgCCGgc -5'
11051 5' -65.3 NC_002794.1 + 841 0.71 0.318814
Target:  5'- cCCCGgcgcgugcguucggcCCAGCgCGCGCccgcgaGGCGGUCGGCg- -3'
miRNA:   3'- -GGGC---------------GGUCG-GCGCG------CCGCUAGCCGgc -5'
11051 5' -65.3 NC_002794.1 + 6931 0.7 0.379821
Target:  5'- gCCGCagccGCCGCGCGGCacccucUCGGUCu -3'
miRNA:   3'- gGGCGgu--CGGCGCGCCGcu----AGCCGGc -5'
11051 5' -65.3 NC_002794.1 + 12188 0.68 0.468424
Target:  5'- gCCGCCGcggccgggcGCCGCucggacgugccgGCGGCG-UCGGCgGc -3'
miRNA:   3'- gGGCGGU---------CGGCG------------CGCCGCuAGCCGgC- -5'
11051 5' -65.3 NC_002794.1 + 12379 0.68 0.477004
Target:  5'- gCUCGCCuGCCGCGCu-CGccUGGCCGa -3'
miRNA:   3'- -GGGCGGuCGGCGCGccGCuaGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 12772 0.76 0.155034
Target:  5'- gCCGCC-GCCGCGCuucGGCGAgaacgugacgaUCGGCCc -3'
miRNA:   3'- gGGCGGuCGGCGCG---CCGCU-----------AGCCGGc -5'
11051 5' -65.3 NC_002794.1 + 12956 0.67 0.529988
Target:  5'- -gCGUUGGCCGUGuCGGUGAcgUGGCCu -3'
miRNA:   3'- ggGCGGUCGGCGC-GCCGCUa-GCCGGc -5'
11051 5' -65.3 NC_002794.1 + 13258 0.67 0.548139
Target:  5'- cCUCGCCGGgC-UGUGGUGGagCGGCCGc -3'
miRNA:   3'- -GGGCGGUCgGcGCGCCGCUa-GCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 13798 0.71 0.307661
Target:  5'- gCCGucuucgcgacgggcCCGGCCG-GCGGCGA-CGGCCu -3'
miRNA:   3'- gGGC--------------GGUCGGCgCGCCGCUaGCCGGc -5'
11051 5' -65.3 NC_002794.1 + 14254 0.66 0.612916
Target:  5'- aCCGCCGGCuCGacccCGaccgaGGUGuUCGGCUGg -3'
miRNA:   3'- gGGCGGUCG-GC----GCg----CCGCuAGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 14480 0.68 0.451507
Target:  5'- gCCgCGCUcGCUGUucGCGGCGG-CGGCCc -3'
miRNA:   3'- -GG-GCGGuCGGCG--CGCCGCUaGCCGGc -5'
11051 5' -65.3 NC_002794.1 + 14553 0.69 0.426775
Target:  5'- cCCCGUCga-CGCGCgggaGGCGAgcCGGCCGa -3'
miRNA:   3'- -GGGCGGucgGCGCG----CCGCUa-GCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 14651 0.71 0.303156
Target:  5'- -aCGCCGGCgC-CGCGGCG-UCGGuCCGa -3'
miRNA:   3'- ggGCGGUCG-GcGCGCCGCuAGCC-GGC- -5'
11051 5' -65.3 NC_002794.1 + 14766 0.67 0.529988
Target:  5'- gCCGUCgaGGCCGCugaggcCGGCGA--GGCCGg -3'
miRNA:   3'- gGGCGG--UCGGCGc-----GCCGCUagCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 14867 0.68 0.48566
Target:  5'- -aCGCCAGCCGCcCGGUucgccgCGaGCCGa -3'
miRNA:   3'- ggGCGGUCGGCGcGCCGcua---GC-CGGC- -5'
11051 5' -65.3 NC_002794.1 + 16302 0.69 0.43493
Target:  5'- gCCUGgCGGCCGCGgcCGGCugGAUCccccugccccuGGCCGg -3'
miRNA:   3'- -GGGCgGUCGGCGC--GCCG--CUAG-----------CCGGC- -5'
11051 5' -65.3 NC_002794.1 + 16364 0.67 0.557288
Target:  5'- aCCCGCac-CCGCGUGcaCGG-CGGCCGg -3'
miRNA:   3'- -GGGCGgucGGCGCGCc-GCUaGCCGGC- -5'
11051 5' -65.3 NC_002794.1 + 16894 0.68 0.48566
Target:  5'- aCCGCC-GCCGCGacagccGCGAUcCGaGCCGc -3'
miRNA:   3'- gGGCGGuCGGCGCgc----CGCUA-GC-CGGC- -5'
11051 5' -65.3 NC_002794.1 + 17229 0.71 0.318814
Target:  5'- gCCGCCAccGCCGCcaccacccuucgacgGCGGCGAccCGGCuCGu -3'
miRNA:   3'- gGGCGGU--CGGCG---------------CGCCGCUa-GCCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.