miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11052 3' -56.1 NC_002794.1 + 188553 0.66 0.949413
Target:  5'- gCGGCGGguaCUgCUgCCGcacGUGCCGACa- -3'
miRNA:   3'- -GCCGCCauaGA-GA-GGC---UACGGCUGac -5'
11052 3' -56.1 NC_002794.1 + 95027 0.66 0.931208
Target:  5'- uGuGCGGcAUCUCgCCGGUGgCGGCg- -3'
miRNA:   3'- gC-CGCCaUAGAGaGGCUACgGCUGac -5'
11052 3' -56.1 NC_002794.1 + 161573 0.66 0.931208
Target:  5'- gCGGCGGagccgucgGUCUCgUCUGAU-UCGACUGc -3'
miRNA:   3'- -GCCGCCa-------UAGAG-AGGCUAcGGCUGAC- -5'
11052 3' -56.1 NC_002794.1 + 44178 0.67 0.920742
Target:  5'- gCGGCGGcucGUCgaCUCCGGgcgaagccggGCCGACg- -3'
miRNA:   3'- -GCCGCCa--UAGa-GAGGCUa---------CGGCUGac -5'
11052 3' -56.1 NC_002794.1 + 142054 0.67 0.90334
Target:  5'- cCGGCGGU-----UCCGGUGCgGGCUc -3'
miRNA:   3'- -GCCGCCAuagagAGGCUACGgCUGAc -5'
11052 3' -56.1 NC_002794.1 + 65964 0.67 0.90334
Target:  5'- gCGGCGGcGUCUcCUCCGGcaccaacGUCGAaCUGg -3'
miRNA:   3'- -GCCGCCaUAGA-GAGGCUa------CGGCU-GAC- -5'
11052 3' -56.1 NC_002794.1 + 110640 0.68 0.890621
Target:  5'- gCGGCGGggucggGUUUCUCCGGcggcUGCaGACa- -3'
miRNA:   3'- -GCCGCCa-----UAGAGAGGCU----ACGgCUGac -5'
11052 3' -56.1 NC_002794.1 + 180934 0.69 0.847403
Target:  5'- uCGGaGGUcgGUCUCgcgUCCGcgGCCGACg- -3'
miRNA:   3'- -GCCgCCA--UAGAG---AGGCuaCGGCUGac -5'
11052 3' -56.1 NC_002794.1 + 136737 0.69 0.839514
Target:  5'- aGGCGGUcgagguucGUCUCcCCGA-GCUGGCg- -3'
miRNA:   3'- gCCGCCA--------UAGAGaGGCUaCGGCUGac -5'
11052 3' -56.1 NC_002794.1 + 121528 0.69 0.823203
Target:  5'- cCGGCGGUcGUCUCgacggagcCCGGUGaCGACg- -3'
miRNA:   3'- -GCCGCCA-UAGAGa-------GGCUACgGCUGac -5'
11052 3' -56.1 NC_002794.1 + 110727 0.69 0.823203
Target:  5'- aGGuCGGgggGUCUCUCCaGAUGCUGuCg- -3'
miRNA:   3'- gCC-GCCa--UAGAGAGG-CUACGGCuGac -5'
11052 3' -56.1 NC_002794.1 + 89488 0.7 0.788653
Target:  5'- -uGCGGUGUCUCcCgCGAUGCgGGCa- -3'
miRNA:   3'- gcCGCCAUAGAGaG-GCUACGgCUGac -5'
11052 3' -56.1 NC_002794.1 + 43263 0.73 0.614388
Target:  5'- gGGUGGUAgcaCUCgcagaUCCGcUGCCGGCUGu -3'
miRNA:   3'- gCCGCCAUa--GAG-----AGGCuACGGCUGAC- -5'
11052 3' -56.1 NC_002794.1 + 16290 0.73 0.594448
Target:  5'- uGGCGGaGUCUagccuggcggCCGcgGCCGGCUGg -3'
miRNA:   3'- gCCGCCaUAGAga--------GGCuaCGGCUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.