miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11052 5' -60.3 NC_002794.1 + 187067 0.66 0.832229
Target:  5'- gCCCGccaGGUGCCGcaGGcUGCUCGCCa -3'
miRNA:   3'- aGGGCaa-CCGUGGCc-CCuAUGGGCGG- -5'
11052 5' -60.3 NC_002794.1 + 157427 0.66 0.832229
Target:  5'- uUUCUGUUGGUcgucGCCucGGAUcccaaaacguucACCCGCCg -3'
miRNA:   3'- -AGGGCAACCG----UGGccCCUA------------UGGGCGG- -5'
11052 5' -60.3 NC_002794.1 + 1694 0.66 0.832229
Target:  5'- gCCUGauacgGGgACCGGGGGcguguuCCuCGCCa -3'
miRNA:   3'- aGGGCaa---CCgUGGCCCCUau----GG-GCGG- -5'
11052 5' -60.3 NC_002794.1 + 1631 0.66 0.832229
Target:  5'- gCCUGauacgGGgACCGGGGGcguguuCCuCGCCa -3'
miRNA:   3'- aGGGCaa---CCgUGGCCCCUau----GG-GCGG- -5'
11052 5' -60.3 NC_002794.1 + 55141 0.66 0.832229
Target:  5'- gUCgCGUcGGCACCGGGaGAcACgaGUCg -3'
miRNA:   3'- -AGgGCAaCCGUGGCCC-CUaUGggCGG- -5'
11052 5' -60.3 NC_002794.1 + 68327 0.66 0.832229
Target:  5'- uUCCgCGgccUGGUgACCGGGuucAUCCGCCa -3'
miRNA:   3'- -AGG-GCa--ACCG-UGGCCCcuaUGGGCGG- -5'
11052 5' -60.3 NC_002794.1 + 131378 0.66 0.832229
Target:  5'- gCCCGUggucGGCGCCGc----GCCCGUCa -3'
miRNA:   3'- aGGGCAa---CCGUGGCcccuaUGGGCGG- -5'
11052 5' -60.3 NC_002794.1 + 135488 0.66 0.832229
Target:  5'- -gCCGUcgacGCGCgCGGGcccGAUGCCCGCa -3'
miRNA:   3'- agGGCAac--CGUG-GCCC---CUAUGGGCGg -5'
11052 5' -60.3 NC_002794.1 + 50593 0.66 0.831439
Target:  5'- -gCUGgguggccGGCGCCGGGGGgaucgagacgagcUGCuuGCCc -3'
miRNA:   3'- agGGCaa-----CCGUGGCCCCU-------------AUGggCGG- -5'
11052 5' -60.3 NC_002794.1 + 48569 0.66 0.824264
Target:  5'- gCCCGUccagaugGGCgaGCCGGaGGAgcgGCgCGUCg -3'
miRNA:   3'- aGGGCAa------CCG--UGGCC-CCUa--UGgGCGG- -5'
11052 5' -60.3 NC_002794.1 + 136544 0.66 0.824264
Target:  5'- gCCCGa--GCACCGGG--UACUCGUCu -3'
miRNA:   3'- aGGGCaacCGUGGCCCcuAUGGGCGG- -5'
11052 5' -60.3 NC_002794.1 + 15107 0.66 0.824264
Target:  5'- aUCCCGac-GCGCCGGaGAccgaCCGCCg -3'
miRNA:   3'- -AGGGCaacCGUGGCCcCUaug-GGCGG- -5'
11052 5' -60.3 NC_002794.1 + 66529 0.66 0.822652
Target:  5'- cCCCGgguccgcgaaggucGGCGCCGGcGGAUaguaauacgguaucGCCggCGCCg -3'
miRNA:   3'- aGGGCaa------------CCGUGGCC-CCUA--------------UGG--GCGG- -5'
11052 5' -60.3 NC_002794.1 + 122286 0.66 0.816142
Target:  5'- gUCCUGgacgGGCG-CGaGGaGUGCCCGCUg -3'
miRNA:   3'- -AGGGCaa--CCGUgGC-CCcUAUGGGCGG- -5'
11052 5' -60.3 NC_002794.1 + 41864 0.66 0.816142
Target:  5'- -gCCGccgGGCaggGCCGGGcGcUGCCaCGCCa -3'
miRNA:   3'- agGGCaa-CCG---UGGCCC-CuAUGG-GCGG- -5'
11052 5' -60.3 NC_002794.1 + 101247 0.66 0.816142
Target:  5'- cUCCGgcGcGCAgCGGGGGg--CCGCCc -3'
miRNA:   3'- aGGGCaaC-CGUgGCCCCUaugGGCGG- -5'
11052 5' -60.3 NC_002794.1 + 60638 0.66 0.816142
Target:  5'- aCCC---GGCGCCGGcGGc-GCCgGCCa -3'
miRNA:   3'- aGGGcaaCCGUGGCC-CCuaUGGgCGG- -5'
11052 5' -60.3 NC_002794.1 + 47956 0.66 0.807871
Target:  5'- gUCCC---GGCGCCGGcuGGGcgaCCGCCg -3'
miRNA:   3'- -AGGGcaaCCGUGGCC--CCUaugGGCGG- -5'
11052 5' -60.3 NC_002794.1 + 187764 0.66 0.807036
Target:  5'- -gCCGccGGCGCCGGucgccucgaccccGGAggaacgGCCCGCg -3'
miRNA:   3'- agGGCaaCCGUGGCC-------------CCUa-----UGGGCGg -5'
11052 5' -60.3 NC_002794.1 + 154395 0.66 0.799458
Target:  5'- gCCCGUucgcgUGGUGCCGGuGGccagcGCUCGCa -3'
miRNA:   3'- aGGGCA-----ACCGUGGCC-CCua---UGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.