miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11053 3' -50.1 NC_002794.1 + 129678 0.66 0.999046
Target:  5'- gCGAUCugcuCGCGGGguGCugGAcaccauGUGggGCa -3'
miRNA:   3'- aGUUAG----GCGCCC--UGugCUu-----CACuuUG- -5'
11053 3' -50.1 NC_002794.1 + 110135 0.66 0.99884
Target:  5'- ----aCUGCGGGACuGCGGAGaGAGGg -3'
miRNA:   3'- aguuaGGCGCCCUG-UGCUUCaCUUUg -5'
11053 3' -50.1 NC_002794.1 + 115516 0.66 0.99884
Target:  5'- -aGGUCCGCcugucgcaGGACGCGGAG-GAAGu -3'
miRNA:   3'- agUUAGGCGc-------CCUGUGCUUCaCUUUg -5'
11053 3' -50.1 NC_002794.1 + 99352 0.66 0.99884
Target:  5'- gCGAUCCGuCGGuuGgACGAAGaGAAGCg -3'
miRNA:   3'- aGUUAGGC-GCCc-UgUGCUUCaCUUUG- -5'
11053 3' -50.1 NC_002794.1 + 189780 0.66 0.998818
Target:  5'- cCAG-CCGCGGGAUGCGGAaaucgccGUcGAACc -3'
miRNA:   3'- aGUUaGGCGCCCUGUGCUU-------CAcUUUG- -5'
11053 3' -50.1 NC_002794.1 + 89082 0.66 0.998315
Target:  5'- cUCGAauuaUCgCGUGGGguguaGCugGggGUGAGAa -3'
miRNA:   3'- -AGUU----AG-GCGCCC-----UGugCuuCACUUUg -5'
11053 3' -50.1 NC_002794.1 + 127681 0.66 0.998315
Target:  5'- cUCGAgcCCGguCGGGGCgACGuGGGUGGGACa -3'
miRNA:   3'- -AGUUa-GGC--GCCCUG-UGC-UUCACUUUG- -5'
11053 3' -50.1 NC_002794.1 + 23215 0.66 0.997984
Target:  5'- gUCAcGUCCa-GGGACAUGAAGcccGggGCg -3'
miRNA:   3'- -AGU-UAGGcgCCCUGUGCUUCa--CuuUG- -5'
11053 3' -50.1 NC_002794.1 + 44286 0.66 0.997984
Target:  5'- -gAGUCCGCGcccgccGGGCcgGCGAGGcggGGAGCg -3'
miRNA:   3'- agUUAGGCGC------CCUG--UGCUUCa--CUUUG- -5'
11053 3' -50.1 NC_002794.1 + 145031 0.67 0.997601
Target:  5'- -uGAUCCugGCGGaAUACGAGGUGGucAACu -3'
miRNA:   3'- agUUAGG--CGCCcUGUGCUUCACU--UUG- -5'
11053 3' -50.1 NC_002794.1 + 40527 0.67 0.997159
Target:  5'- aCGcgCCGaCGGGAgACGAGGgGGccGGCg -3'
miRNA:   3'- aGUuaGGC-GCCCUgUGCUUCaCU--UUG- -5'
11053 3' -50.1 NC_002794.1 + 1379 0.67 0.996651
Target:  5'- aCAccAUCCGgGGGACAaUGAggcGGUGAcACc -3'
miRNA:   3'- aGU--UAGGCgCCCUGU-GCU---UCACUuUG- -5'
11053 3' -50.1 NC_002794.1 + 115892 0.67 0.996651
Target:  5'- --cGUCCGCGGaGCGCGggG-GGuuCg -3'
miRNA:   3'- aguUAGGCGCCcUGUGCuuCaCUuuG- -5'
11053 3' -50.1 NC_002794.1 + 13093 0.67 0.996071
Target:  5'- -aAGUCC-CGGGGgACGAGGUGcguucGGCg -3'
miRNA:   3'- agUUAGGcGCCCUgUGCUUCACu----UUG- -5'
11053 3' -50.1 NC_002794.1 + 110059 0.68 0.994663
Target:  5'- -gGAUCCGuCGGaGAgCGCGGAucgcggucGUGAGACg -3'
miRNA:   3'- agUUAGGC-GCC-CU-GUGCUU--------CACUUUG- -5'
11053 3' -50.1 NC_002794.1 + 94396 0.68 0.994663
Target:  5'- gUCGcgCgUGCGGGGacCGCGguGUGggGCg -3'
miRNA:   3'- -AGUuaG-GCGCCCU--GUGCuuCACuuUG- -5'
11053 3' -50.1 NC_002794.1 + 34726 0.68 0.994663
Target:  5'- aCGAggCGCGGGcggccgcagagcGCGCGAcggcgcGGUGGGACg -3'
miRNA:   3'- aGUUagGCGCCC------------UGUGCU------UCACUUUG- -5'
11053 3' -50.1 NC_002794.1 + 86893 0.68 0.993819
Target:  5'- cCGAUCCcgGCGGGGCcgcCGAcccGGUGAcGCc -3'
miRNA:   3'- aGUUAGG--CGCCCUGu--GCU---UCACUuUG- -5'
11053 3' -50.1 NC_002794.1 + 180946 0.68 0.992872
Target:  5'- cUCGcGUCCGCGGccGACGCGGAcuccGUcGggGCg -3'
miRNA:   3'- -AGU-UAGGCGCC--CUGUGCUU----CA-CuuUG- -5'
11053 3' -50.1 NC_002794.1 + 157961 0.69 0.98932
Target:  5'- gUCcGUCCGgauUGGGGCACGGA--GAAGCg -3'
miRNA:   3'- -AGuUAGGC---GCCCUGUGCUUcaCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.