Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11053 | 3' | -50.1 | NC_002794.1 | + | 90531 | 0.73 | 0.90558 |
Target: 5'- cUCGucUCCGCGGGugACGucGUGu-GCa -3' miRNA: 3'- -AGUu-AGGCGCCCugUGCuuCACuuUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 116834 | 0.73 | 0.911795 |
Target: 5'- -uGGUCC-CGGGACGCGcGGUGGAu- -3' miRNA: 3'- agUUAGGcGCCCUGUGCuUCACUUug -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 60479 | 0.71 | 0.952567 |
Target: 5'- --cAUCCGCGGcGACACGGAGa----- -3' miRNA: 3'- aguUAGGCGCC-CUGUGCUUCacuuug -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 131894 | 0.71 | 0.95656 |
Target: 5'- cUCGGUCgCGCGcGGGCACGu-GUaGGGACa -3' miRNA: 3'- -AGUUAG-GCGC-CCUGUGCuuCA-CUUUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 93608 | 0.71 | 0.95656 |
Target: 5'- aUCGGguacUuuGCGGGcaACGggGUGGAGCg -3' miRNA: 3'- -AGUU----AggCGCCCugUGCuuCACUUUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 43850 | 0.71 | 0.960318 |
Target: 5'- aCAGUCCcgcucggccCGGGGCACGuagacGGUGAGAUa -3' miRNA: 3'- aGUUAGGc--------GCCCUGUGCu----UCACUUUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 110163 | 0.71 | 0.963846 |
Target: 5'- aCGucgUCGCGGGGCAUGAGGcucGAGAUg -3' miRNA: 3'- aGUua-GGCGCCCUGUGCUUCa--CUUUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 21869 | 0.71 | 0.967148 |
Target: 5'- aCGGUCCGCGaGGccggcCGCGggGUGuccGCg -3' miRNA: 3'- aGUUAGGCGC-CCu----GUGCuuCACuu-UG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 128801 | 0.7 | 0.973101 |
Target: 5'- -gAAUCCGCGGcACGCGuGGUGGcGGCu -3' miRNA: 3'- agUUAGGCGCCcUGUGCuUCACU-UUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 105830 | 0.69 | 0.9826 |
Target: 5'- gUCGGUCgagcgaGCGGGAC-CGAGG-GGAAUg -3' miRNA: 3'- -AGUUAGg-----CGCCCUGuGCUUCaCUUUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 112752 | 0.69 | 0.987871 |
Target: 5'- ---cUCCGCGGcGGCGggguCGggGUGAGGu -3' miRNA: 3'- aguuAGGCGCC-CUGU----GCuuCACUUUg -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 157961 | 0.69 | 0.98932 |
Target: 5'- gUCcGUCCGgauUGGGGCACGGA--GAAGCg -3' miRNA: 3'- -AGuUAGGC---GCCCUGUGCUUcaCUUUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 180946 | 0.68 | 0.992872 |
Target: 5'- cUCGcGUCCGCGGccGACGCGGAcuccGUcGggGCg -3' miRNA: 3'- -AGU-UAGGCGCC--CUGUGCUU----CA-CuuUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 86893 | 0.68 | 0.993819 |
Target: 5'- cCGAUCCcgGCGGGGCcgcCGAcccGGUGAcGCc -3' miRNA: 3'- aGUUAGG--CGCCCUGu--GCU---UCACUuUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 110059 | 0.68 | 0.994663 |
Target: 5'- -gGAUCCGuCGGaGAgCGCGGAucgcggucGUGAGACg -3' miRNA: 3'- agUUAGGC-GCC-CU-GUGCUU--------CACUUUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 94396 | 0.68 | 0.994663 |
Target: 5'- gUCGcgCgUGCGGGGacCGCGguGUGggGCg -3' miRNA: 3'- -AGUuaG-GCGCCCU--GUGCuuCACuuUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 34726 | 0.68 | 0.994663 |
Target: 5'- aCGAggCGCGGGcggccgcagagcGCGCGAcggcgcGGUGGGACg -3' miRNA: 3'- aGUUagGCGCCC------------UGUGCU------UCACUUUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 13093 | 0.67 | 0.996071 |
Target: 5'- -aAGUCC-CGGGGgACGAGGUGcguucGGCg -3' miRNA: 3'- agUUAGGcGCCCUgUGCUUCACu----UUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 1379 | 0.67 | 0.996651 |
Target: 5'- aCAccAUCCGgGGGACAaUGAggcGGUGAcACc -3' miRNA: 3'- aGU--UAGGCgCCCUGU-GCU---UCACUuUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 115892 | 0.67 | 0.996651 |
Target: 5'- --cGUCCGCGGaGCGCGggG-GGuuCg -3' miRNA: 3'- aguUAGGCGCCcUGUGCuuCaCUuuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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