miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11053 3' -50.1 NC_002794.1 + 1379 0.67 0.996651
Target:  5'- aCAccAUCCGgGGGACAaUGAggcGGUGAcACc -3'
miRNA:   3'- aGU--UAGGCgCCCUGU-GCU---UCACUuUG- -5'
11053 3' -50.1 NC_002794.1 + 13093 0.67 0.996071
Target:  5'- -aAGUCC-CGGGGgACGAGGUGcguucGGCg -3'
miRNA:   3'- agUUAGGcGCCCUgUGCUUCACu----UUG- -5'
11053 3' -50.1 NC_002794.1 + 21869 0.71 0.967148
Target:  5'- aCGGUCCGCGaGGccggcCGCGggGUGuccGCg -3'
miRNA:   3'- aGUUAGGCGC-CCu----GUGCuuCACuu-UG- -5'
11053 3' -50.1 NC_002794.1 + 23215 0.66 0.997984
Target:  5'- gUCAcGUCCa-GGGACAUGAAGcccGggGCg -3'
miRNA:   3'- -AGU-UAGGcgCCCUGUGCUUCa--CuuUG- -5'
11053 3' -50.1 NC_002794.1 + 34726 0.68 0.994663
Target:  5'- aCGAggCGCGGGcggccgcagagcGCGCGAcggcgcGGUGGGACg -3'
miRNA:   3'- aGUUagGCGCCC------------UGUGCU------UCACUUUG- -5'
11053 3' -50.1 NC_002794.1 + 40527 0.67 0.997159
Target:  5'- aCGcgCCGaCGGGAgACGAGGgGGccGGCg -3'
miRNA:   3'- aGUuaGGC-GCCCUgUGCUUCaCU--UUG- -5'
11053 3' -50.1 NC_002794.1 + 43850 0.71 0.960318
Target:  5'- aCAGUCCcgcucggccCGGGGCACGuagacGGUGAGAUa -3'
miRNA:   3'- aGUUAGGc--------GCCCUGUGCu----UCACUUUG- -5'
11053 3' -50.1 NC_002794.1 + 44286 0.66 0.997984
Target:  5'- -gAGUCCGCGcccgccGGGCcgGCGAGGcggGGAGCg -3'
miRNA:   3'- agUUAGGCGC------CCUG--UGCUUCa--CUUUG- -5'
11053 3' -50.1 NC_002794.1 + 60479 0.71 0.952567
Target:  5'- --cAUCCGCGGcGACACGGAGa----- -3'
miRNA:   3'- aguUAGGCGCC-CUGUGCUUCacuuug -5'
11053 3' -50.1 NC_002794.1 + 86893 0.68 0.993819
Target:  5'- cCGAUCCcgGCGGGGCcgcCGAcccGGUGAcGCc -3'
miRNA:   3'- aGUUAGG--CGCCCUGu--GCU---UCACUuUG- -5'
11053 3' -50.1 NC_002794.1 + 89082 0.66 0.998315
Target:  5'- cUCGAauuaUCgCGUGGGguguaGCugGggGUGAGAa -3'
miRNA:   3'- -AGUU----AG-GCGCCC-----UGugCuuCACUUUg -5'
11053 3' -50.1 NC_002794.1 + 90531 0.73 0.90558
Target:  5'- cUCGucUCCGCGGGugACGucGUGu-GCa -3'
miRNA:   3'- -AGUu-AGGCGCCCugUGCuuCACuuUG- -5'
11053 3' -50.1 NC_002794.1 + 93608 0.71 0.95656
Target:  5'- aUCGGguacUuuGCGGGcaACGggGUGGAGCg -3'
miRNA:   3'- -AGUU----AggCGCCCugUGCuuCACUUUG- -5'
11053 3' -50.1 NC_002794.1 + 94396 0.68 0.994663
Target:  5'- gUCGcgCgUGCGGGGacCGCGguGUGggGCg -3'
miRNA:   3'- -AGUuaG-GCGCCCU--GUGCuuCACuuUG- -5'
11053 3' -50.1 NC_002794.1 + 99352 0.66 0.99884
Target:  5'- gCGAUCCGuCGGuuGgACGAAGaGAAGCg -3'
miRNA:   3'- aGUUAGGC-GCCc-UgUGCUUCaCUUUG- -5'
11053 3' -50.1 NC_002794.1 + 105830 0.69 0.9826
Target:  5'- gUCGGUCgagcgaGCGGGAC-CGAGG-GGAAUg -3'
miRNA:   3'- -AGUUAGg-----CGCCCUGuGCUUCaCUUUG- -5'
11053 3' -50.1 NC_002794.1 + 110059 0.68 0.994663
Target:  5'- -gGAUCCGuCGGaGAgCGCGGAucgcggucGUGAGACg -3'
miRNA:   3'- agUUAGGC-GCC-CU-GUGCUU--------CACUUUG- -5'
11053 3' -50.1 NC_002794.1 + 110135 0.66 0.99884
Target:  5'- ----aCUGCGGGACuGCGGAGaGAGGg -3'
miRNA:   3'- aguuaGGCGCCCUG-UGCUUCaCUUUg -5'
11053 3' -50.1 NC_002794.1 + 110163 0.71 0.963846
Target:  5'- aCGucgUCGCGGGGCAUGAGGcucGAGAUg -3'
miRNA:   3'- aGUua-GGCGCCCUGUGCUUCa--CUUUG- -5'
11053 3' -50.1 NC_002794.1 + 112752 0.69 0.987871
Target:  5'- ---cUCCGCGGcGGCGggguCGggGUGAGGu -3'
miRNA:   3'- aguuAGGCGCC-CUGU----GCuuCACUUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.