Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11053 | 3' | -50.1 | NC_002794.1 | + | 89082 | 0.66 | 0.998315 |
Target: 5'- cUCGAauuaUCgCGUGGGguguaGCugGggGUGAGAa -3' miRNA: 3'- -AGUU----AG-GCGCCC-----UGugCuuCACUUUg -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 86893 | 0.68 | 0.993819 |
Target: 5'- cCGAUCCcgGCGGGGCcgcCGAcccGGUGAcGCc -3' miRNA: 3'- aGUUAGG--CGCCCUGu--GCU---UCACUuUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 60479 | 0.71 | 0.952567 |
Target: 5'- --cAUCCGCGGcGACACGGAGa----- -3' miRNA: 3'- aguUAGGCGCC-CUGUGCUUCacuuug -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 44286 | 0.66 | 0.997984 |
Target: 5'- -gAGUCCGCGcccgccGGGCcgGCGAGGcggGGAGCg -3' miRNA: 3'- agUUAGGCGC------CCUG--UGCUUCa--CUUUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 43850 | 0.71 | 0.960318 |
Target: 5'- aCAGUCCcgcucggccCGGGGCACGuagacGGUGAGAUa -3' miRNA: 3'- aGUUAGGc--------GCCCUGUGCu----UCACUUUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 40527 | 0.67 | 0.997159 |
Target: 5'- aCGcgCCGaCGGGAgACGAGGgGGccGGCg -3' miRNA: 3'- aGUuaGGC-GCCCUgUGCUUCaCU--UUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 34726 | 0.68 | 0.994663 |
Target: 5'- aCGAggCGCGGGcggccgcagagcGCGCGAcggcgcGGUGGGACg -3' miRNA: 3'- aGUUagGCGCCC------------UGUGCU------UCACUUUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 23215 | 0.66 | 0.997984 |
Target: 5'- gUCAcGUCCa-GGGACAUGAAGcccGggGCg -3' miRNA: 3'- -AGU-UAGGcgCCCUGUGCUUCa--CuuUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 21869 | 0.71 | 0.967148 |
Target: 5'- aCGGUCCGCGaGGccggcCGCGggGUGuccGCg -3' miRNA: 3'- aGUUAGGCGC-CCu----GUGCuuCACuu-UG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 13093 | 0.67 | 0.996071 |
Target: 5'- -aAGUCC-CGGGGgACGAGGUGcguucGGCg -3' miRNA: 3'- agUUAGGcGCCCUgUGCUUCACu----UUG- -5' |
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11053 | 3' | -50.1 | NC_002794.1 | + | 1379 | 0.67 | 0.996651 |
Target: 5'- aCAccAUCCGgGGGACAaUGAggcGGUGAcACc -3' miRNA: 3'- aGU--UAGGCgCCCUGU-GCU---UCACUuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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