miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11054 3' -53.1 NC_002794.1 + 118082 0.66 0.990684
Target:  5'- aCAUc-UGGaGCACGGCcUGGAacuCGGGCa -3'
miRNA:   3'- gGUAaaACC-CGUGUUGcGCCU---GCCCG- -5'
11054 3' -53.1 NC_002794.1 + 150175 0.66 0.990684
Target:  5'- gCCAgacc-GGCAgAccuuCGUGGugGGGCc -3'
miRNA:   3'- -GGUaaaacCCGUgUu---GCGCCugCCCG- -5'
11054 3' -53.1 NC_002794.1 + 176694 0.66 0.990684
Target:  5'- gCCGUgcaaUGGGa--AACgGUGGACGGGa -3'
miRNA:   3'- -GGUAaa--ACCCgugUUG-CGCCUGCCCg -5'
11054 3' -53.1 NC_002794.1 + 32000 0.66 0.990684
Target:  5'- -----gUGGGCGagcCGACGCagaccaggcaggGGACGcGGCg -3'
miRNA:   3'- gguaaaACCCGU---GUUGCG------------CCUGC-CCG- -5'
11054 3' -53.1 NC_002794.1 + 118294 0.66 0.990317
Target:  5'- aCCGcgccGGGCGCGuCGCucgucgucgucgucGcGACGGGCg -3'
miRNA:   3'- -GGUaaaaCCCGUGUuGCG--------------C-CUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 94061 0.66 0.989418
Target:  5'- ------cGGGgGCGGCGgGGGgcgaGGGCa -3'
miRNA:   3'- gguaaaaCCCgUGUUGCgCCUg---CCCG- -5'
11054 3' -53.1 NC_002794.1 + 140678 0.66 0.989284
Target:  5'- ------cGGGCGCAggucgguGCGaCGGACcGGCc -3'
miRNA:   3'- gguaaaaCCCGUGU-------UGC-GCCUGcCCG- -5'
11054 3' -53.1 NC_002794.1 + 143391 0.66 0.989284
Target:  5'- ------aGGGuCAgcugcugcucgacCGGCGCGGGcCGGGCg -3'
miRNA:   3'- gguaaaaCCC-GU-------------GUUGCGCCU-GCCCG- -5'
11054 3' -53.1 NC_002794.1 + 184016 0.66 0.988596
Target:  5'- aCCAUcgccGGccgccacggcaccgcGCGCAgcGCGCGGucGCGGGCc -3'
miRNA:   3'- -GGUAaaa-CC---------------CGUGU--UGCGCC--UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 38478 0.66 0.988021
Target:  5'- cCCuUUaUGGGCGgaggaAGCGCGG-CGGcGCc -3'
miRNA:   3'- -GGuAAaACCCGUg----UUGCGCCuGCC-CG- -5'
11054 3' -53.1 NC_002794.1 + 34734 0.66 0.988021
Target:  5'- ------cGGGCggccGCAgaGCGCGcGACGGcGCg -3'
miRNA:   3'- gguaaaaCCCG----UGU--UGCGC-CUGCC-CG- -5'
11054 3' -53.1 NC_002794.1 + 127931 0.66 0.988021
Target:  5'- -gAUUcgGGGCGUgucggucaugugGACGUGGACGuGGCu -3'
miRNA:   3'- ggUAAaaCCCGUG------------UUGCGCCUGC-CCG- -5'
11054 3' -53.1 NC_002794.1 + 40113 0.66 0.988021
Target:  5'- aCGg---GGGCGCGcgagaGCGGAgagccaCGGGCu -3'
miRNA:   3'- gGUaaaaCCCGUGUug---CGCCU------GCCCG- -5'
11054 3' -53.1 NC_002794.1 + 152813 0.66 0.986486
Target:  5'- cCCGaucgGGGUGCcgUGCGGACacGGCg -3'
miRNA:   3'- -GGUaaaaCCCGUGuuGCGCCUGc-CCG- -5'
11054 3' -53.1 NC_002794.1 + 104518 0.66 0.986486
Target:  5'- ------cGGGCugAgGCGCGGGUGGcGCg -3'
miRNA:   3'- gguaaaaCCCGugU-UGCGCCUGCC-CG- -5'
11054 3' -53.1 NC_002794.1 + 190963 0.66 0.986486
Target:  5'- aCCAgcgccucgGGGCagcagagcagGCAGCGCGG-CGacGGCg -3'
miRNA:   3'- -GGUaaaa----CCCG----------UGUUGCGCCuGC--CCG- -5'
11054 3' -53.1 NC_002794.1 + 53612 0.66 0.984805
Target:  5'- ------cGGGCcgccGCAGCGuCGGACGGa- -3'
miRNA:   3'- gguaaaaCCCG----UGUUGC-GCCUGCCcg -5'
11054 3' -53.1 NC_002794.1 + 54465 0.66 0.984805
Target:  5'- aCCGgacaccUUGGGgAUgAugGCGGugGcGGCu -3'
miRNA:   3'- -GGUaa----AACCCgUG-UugCGCCugC-CCG- -5'
11054 3' -53.1 NC_002794.1 + 102710 0.66 0.984805
Target:  5'- ------cGGGC-C-GC-CGGACGGGCg -3'
miRNA:   3'- gguaaaaCCCGuGuUGcGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 131867 0.66 0.984271
Target:  5'- cCCGacucUUGGGCGCcgcggccucaucucGGuCGCGcGCGGGCa -3'
miRNA:   3'- -GGUaa--AACCCGUG--------------UU-GCGCcUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.