miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11054 3' -53.1 NC_002794.1 + 139107 0.83 0.287445
Target:  5'- ----aUUGGGCACGACGCGGGCGaucacggagacGGCg -3'
miRNA:   3'- gguaaAACCCGUGUUGCGCCUGC-----------CCG- -5'
11054 3' -53.1 NC_002794.1 + 160316 0.82 0.360285
Target:  5'- uUCGUcuugGGGCugGAgCGCGGAUGGGCg -3'
miRNA:   3'- -GGUAaaa-CCCGugUU-GCGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 91755 0.78 0.510572
Target:  5'- gCCGgcggGcGGCACcGCGCaGGACGGGCu -3'
miRNA:   3'- -GGUaaaaC-CCGUGuUGCG-CCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 83997 0.78 0.52027
Target:  5'- gCCAcgacGGGCACGACGgGcacGACGGGCa -3'
miRNA:   3'- -GGUaaaaCCCGUGUUGCgC---CUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 182287 0.78 0.539876
Target:  5'- cCCAUgacgGGGCggguggacggGCAGacggGCGGACGGGCg -3'
miRNA:   3'- -GGUAaaa-CCCG----------UGUUg---CGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 98920 0.76 0.630416
Target:  5'- uUCAUgagcGGGCugGGCGCGGcCGGGa -3'
miRNA:   3'- -GGUAaaa-CCCGugUUGCGCCuGCCCg -5'
11054 3' -53.1 NC_002794.1 + 101616 0.76 0.639562
Target:  5'- gCCGggcggGGGUGCcguuucguccgcgAGCGUGGGCGGGCg -3'
miRNA:   3'- -GGUaaaa-CCCGUG-------------UUGCGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 92309 0.76 0.644642
Target:  5'- ------gGGGCugGGCGCGGgcggcgggggcccggGCGGGCg -3'
miRNA:   3'- gguaaaaCCCGugUUGCGCC---------------UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 182335 0.76 0.650734
Target:  5'- ------cGGGCggGCGA-GCGGACGGGCg -3'
miRNA:   3'- gguaaaaCCCG--UGUUgCGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 143303 0.75 0.71107
Target:  5'- ------cGGGUGCAGCGCGG-CGGGa -3'
miRNA:   3'- gguaaaaCCCGUGUUGCGCCuGCCCg -5'
11054 3' -53.1 NC_002794.1 + 106350 0.74 0.750086
Target:  5'- ------cGGGU-CGACgGCGGGCGGGCg -3'
miRNA:   3'- gguaaaaCCCGuGUUG-CGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 72544 0.73 0.796489
Target:  5'- gCCGcgcgUGGucGCGCAACGCGGcCGGGa -3'
miRNA:   3'- -GGUaaa-ACC--CGUGUUGCGCCuGCCCg -5'
11054 3' -53.1 NC_002794.1 + 184503 0.73 0.805365
Target:  5'- cCCGg---GcGGCGCGggccccgcGCGCGGcGCGGGCg -3'
miRNA:   3'- -GGUaaaaC-CCGUGU--------UGCGCC-UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 48052 0.73 0.805365
Target:  5'- gCGUgcUGGGCACGGCGCuGAUGGcCg -3'
miRNA:   3'- gGUAaaACCCGUGUUGCGcCUGCCcG- -5'
11054 3' -53.1 NC_002794.1 + 42596 0.73 0.814087
Target:  5'- ------aGGGCGCGGCGgcCGGgaGCGGGCu -3'
miRNA:   3'- gguaaaaCCCGUGUUGC--GCC--UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 142565 0.72 0.831033
Target:  5'- cCCGga-UGGGauagaGCAGCGCG-AUGGGCg -3'
miRNA:   3'- -GGUaaaACCCg----UGUUGCGCcUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 113150 0.72 0.831033
Target:  5'- ------cGGGCGCGucagcguguaGCGCGcGCGGGCg -3'
miRNA:   3'- gguaaaaCCCGUGU----------UGCGCcUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 185167 0.72 0.839242
Target:  5'- uCCuccgccGGCGCGGCGCGGuCGGcGCg -3'
miRNA:   3'- -GGuaaaacCCGUGUUGCGCCuGCC-CG- -5'
11054 3' -53.1 NC_002794.1 + 102174 0.72 0.847266
Target:  5'- gCCAUcgUGGcGCGCGGCGaGGACcuGGCg -3'
miRNA:   3'- -GGUAaaACC-CGUGUUGCgCCUGc-CCG- -5'
11054 3' -53.1 NC_002794.1 + 90994 0.72 0.855097
Target:  5'- ------cGGGC-CGAgGCGGAgCGGGCc -3'
miRNA:   3'- gguaaaaCCCGuGUUgCGCCU-GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.