miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11054 3' -53.1 NC_002794.1 + 126372 0.67 0.982969
Target:  5'- gCCGcugcgUGGGCGCcggggccuGCGCGGcggcguGCGcGGCg -3'
miRNA:   3'- -GGUaaa--ACCCGUGu-------UGCGCC------UGC-CCG- -5'
11054 3' -53.1 NC_002794.1 + 128162 0.67 0.982969
Target:  5'- ------gGcGGCucGCGcCGCGGACGGGUc -3'
miRNA:   3'- gguaaaaC-CCG--UGUuGCGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 122583 0.67 0.982969
Target:  5'- -----cUGGGgAUGAUGaaGGACGGGCu -3'
miRNA:   3'- gguaaaACCCgUGUUGCg-CCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 91027 0.67 0.982969
Target:  5'- aCCGagcucUGGGCGgcccuCGGgGUGGACGGGg -3'
miRNA:   3'- -GGUaaa--ACCCGU-----GUUgCGCCUGCCCg -5'
11054 3' -53.1 NC_002794.1 + 34842 0.67 0.982969
Target:  5'- gCCGgagcGGGCGuCGGaGCGGgcgccGCGGGCg -3'
miRNA:   3'- -GGUaaaaCCCGU-GUUgCGCC-----UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 134911 0.67 0.982776
Target:  5'- ------cGGGUgaaacuuuucgccGCcGgGCGGACGGGCu -3'
miRNA:   3'- gguaaaaCCCG-------------UGuUgCGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 66824 0.67 0.98097
Target:  5'- ------aGGGCGCccGGCGCGacucCGGGCg -3'
miRNA:   3'- gguaaaaCCCGUG--UUGCGCcu--GCCCG- -5'
11054 3' -53.1 NC_002794.1 + 115033 0.67 0.98097
Target:  5'- aCCGUcugcaGGUGCGACcggGCGG-CGGGCg -3'
miRNA:   3'- -GGUAaaac-CCGUGUUG---CGCCuGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 91215 0.67 0.9788
Target:  5'- ------cGGcGaCGCGACgGCGGACGGcGCg -3'
miRNA:   3'- gguaaaaCC-C-GUGUUG-CGCCUGCC-CG- -5'
11054 3' -53.1 NC_002794.1 + 95847 0.67 0.9788
Target:  5'- gCGgccgGGGa--GGCgGCGGGCGGGCc -3'
miRNA:   3'- gGUaaaaCCCgugUUG-CGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 61040 0.67 0.9788
Target:  5'- aCCAgaugcuccUGGGCAUcccCGUGcACGGGCa -3'
miRNA:   3'- -GGUaaa-----ACCCGUGuu-GCGCcUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 180954 0.67 0.978574
Target:  5'- ------cGcGGC-CGACGCGGACuccgucgGGGCg -3'
miRNA:   3'- gguaaaaC-CCGuGUUGCGCCUG-------CCCG- -5'
11054 3' -53.1 NC_002794.1 + 179631 0.67 0.978115
Target:  5'- ------cGGGCGCuGCGaCGGaaaggagaagucagGCGGGCu -3'
miRNA:   3'- gguaaaaCCCGUGuUGC-GCC--------------UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 64099 0.67 0.976696
Target:  5'- aCCGUgcagacgcgaccGGCGCGucugcACGCGGucgACGGGCu -3'
miRNA:   3'- -GGUAaaac--------CCGUGU-----UGCGCC---UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 123804 0.67 0.976453
Target:  5'- gCCGUUcggGGGCGCgGACGagcaGGAgCGGcGCc -3'
miRNA:   3'- -GGUAAaa-CCCGUG-UUGCg---CCU-GCC-CG- -5'
11054 3' -53.1 NC_002794.1 + 123538 0.67 0.976453
Target:  5'- ------cGGGCAC-ACGCGcuacagccGCGGGCu -3'
miRNA:   3'- gguaaaaCCCGUGuUGCGCc-------UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 51259 0.67 0.973921
Target:  5'- gCGUgg-GGGCGgGccgggaggcagGCGCGGcccgcccgaACGGGCa -3'
miRNA:   3'- gGUAaaaCCCGUgU-----------UGCGCC---------UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 63322 0.67 0.971196
Target:  5'- uCCGgcgggGGGCcCgAGCGCGGACcGGUc -3'
miRNA:   3'- -GGUaaaa-CCCGuG-UUGCGCCUGcCCG- -5'
11054 3' -53.1 NC_002794.1 + 141451 0.68 0.968273
Target:  5'- gCCGggagcGGCGCGGCGUccGGACuGGCg -3'
miRNA:   3'- -GGUaaaacCCGUGUUGCG--CCUGcCCG- -5'
11054 3' -53.1 NC_002794.1 + 153673 0.68 0.968273
Target:  5'- gCCGguugUGaGGCuCGACGCGcGACcGGCg -3'
miRNA:   3'- -GGUaaa-AC-CCGuGUUGCGC-CUGcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.