miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11054 3' -53.1 NC_002794.1 + 153673 0.68 0.968273
Target:  5'- gCCGguugUGaGGCuCGACGCGcGACcGGCg -3'
miRNA:   3'- -GGUaaa-AC-CCGuGUUGCGC-CUGcCCG- -5'
11054 3' -53.1 NC_002794.1 + 86925 0.68 0.968273
Target:  5'- cCCGUggcGGGCA-GGCG-GGGCGGGa -3'
miRNA:   3'- -GGUAaaaCCCGUgUUGCgCCUGCCCg -5'
11054 3' -53.1 NC_002794.1 + 82127 0.68 0.968273
Target:  5'- cUCGgcgUGGGCGucACGUGGGCGGa- -3'
miRNA:   3'- -GGUaaaACCCGUguUGCGCCUGCCcg -5'
11054 3' -53.1 NC_002794.1 + 130450 0.68 0.965146
Target:  5'- uCCGUgUUGGGCGgcgaGGCGCuGGCGGcuuGCg -3'
miRNA:   3'- -GGUAaAACCCGUg---UUGCGcCUGCC---CG- -5'
11054 3' -53.1 NC_002794.1 + 183296 0.68 0.965146
Target:  5'- ------cGGGCcCGGCGUcuGGAaCGGGCa -3'
miRNA:   3'- gguaaaaCCCGuGUUGCG--CCU-GCCCG- -5'
11054 3' -53.1 NC_002794.1 + 38661 0.68 0.965146
Target:  5'- aCUAUUUgacucccGcGCGCGAccCGCGGACGGGg -3'
miRNA:   3'- -GGUAAAac-----C-CGUGUU--GCGCCUGCCCg -5'
11054 3' -53.1 NC_002794.1 + 14610 0.68 0.963168
Target:  5'- ------cGGGCACcgcgacggggccggaGACGgGGcCGGGCa -3'
miRNA:   3'- gguaaaaCCCGUG---------------UUGCgCCuGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 87090 0.68 0.961808
Target:  5'- gCCGggcgggUggGGGUGCAgGC-CGGGCGGGUg -3'
miRNA:   3'- -GGUa-----AaaCCCGUGU-UGcGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 87132 0.68 0.961808
Target:  5'- gCCGggcgggUggGGGUGCAgGC-CGGGCGGGUg -3'
miRNA:   3'- -GGUa-----AaaCCCGUGU-UGcGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 87174 0.68 0.961808
Target:  5'- gCCGggcgggUggGGGUGCAgGC-CGGGCGGGUg -3'
miRNA:   3'- -GGUa-----AaaCCCGUGU-UGcGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 87216 0.68 0.961808
Target:  5'- gCCGggcgggUggGGGUGCAgGC-CGGGCGGGUg -3'
miRNA:   3'- -GGUa-----AaaCCCGUGU-UGcGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 87258 0.68 0.961808
Target:  5'- gCCGggcgggUggGGGUGCAgGC-CGGGCGGGUg -3'
miRNA:   3'- -GGUa-----AaaCCCGUGU-UGcGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 94220 0.68 0.961808
Target:  5'- ------gGuGGCgGCGACggGCGGGCGGGCc -3'
miRNA:   3'- gguaaaaC-CCG-UGUUG--CGCCUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 118659 0.68 0.961808
Target:  5'- cUCGUccgUGGGCGCGACGCccGCGGccGCc -3'
miRNA:   3'- -GGUAaa-ACCCGUGUUGCGccUGCC--CG- -5'
11054 3' -53.1 NC_002794.1 + 95739 0.68 0.961808
Target:  5'- aCCGUUggacgGGGCugGuacuCGCGGGgcGGCg -3'
miRNA:   3'- -GGUAAaa---CCCGugUu---GCGCCUgcCCG- -5'
11054 3' -53.1 NC_002794.1 + 120728 0.68 0.961808
Target:  5'- uUCGUcgUGGGCACG--GCGGucCGGGa -3'
miRNA:   3'- -GGUAaaACCCGUGUugCGCCu-GCCCg -5'
11054 3' -53.1 NC_002794.1 + 68460 0.68 0.958254
Target:  5'- cCCGUUUcuu-CACGGCGCaGugGGGCa -3'
miRNA:   3'- -GGUAAAacccGUGUUGCGcCugCCCG- -5'
11054 3' -53.1 NC_002794.1 + 94271 0.68 0.958254
Target:  5'- gUCAUUUgcgcGGCGCGGCccgaGCGGG-GGGCg -3'
miRNA:   3'- -GGUAAAac--CCGUGUUG----CGCCUgCCCG- -5'
11054 3' -53.1 NC_002794.1 + 37316 0.68 0.95448
Target:  5'- ------gGGGCAgAAgacggaGCGGugGGGCc -3'
miRNA:   3'- gguaaaaCCCGUgUUg-----CGCCugCCCG- -5'
11054 3' -53.1 NC_002794.1 + 101011 0.69 0.950482
Target:  5'- ------cGGGCcuuccugucggGgGACGCGGGcCGGGCg -3'
miRNA:   3'- gguaaaaCCCG-----------UgUUGCGCCU-GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.