miRNA display CGI


Results 1 - 20 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11054 3' -53.1 NC_002794.1 + 9739 0.69 0.932187
Target:  5'- aCCGgg-UGGGUAgGugGgGGGgGGGUc -3'
miRNA:   3'- -GGUaaaACCCGUgUugCgCCUgCCCG- -5'
11054 3' -53.1 NC_002794.1 + 14610 0.68 0.963168
Target:  5'- ------cGGGCACcgcgacggggccggaGACGgGGcCGGGCa -3'
miRNA:   3'- gguaaaaCCCGUG---------------UUGCgCCuGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 32000 0.66 0.990684
Target:  5'- -----gUGGGCGagcCGACGCagaccaggcaggGGACGcGGCg -3'
miRNA:   3'- gguaaaACCCGU---GUUGCG------------CCUGC-CCG- -5'
11054 3' -53.1 NC_002794.1 + 34734 0.66 0.988021
Target:  5'- ------cGGGCggccGCAgaGCGCGcGACGGcGCg -3'
miRNA:   3'- gguaaaaCCCG----UGU--UGCGC-CUGCC-CG- -5'
11054 3' -53.1 NC_002794.1 + 34842 0.67 0.982969
Target:  5'- gCCGgagcGGGCGuCGGaGCGGgcgccGCGGGCg -3'
miRNA:   3'- -GGUaaaaCCCGU-GUUgCGCC-----UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 37266 0.71 0.870157
Target:  5'- uCCGUcggcGGGC---GCGCGGGCGcGGCg -3'
miRNA:   3'- -GGUAaaa-CCCGuguUGCGCCUGC-CCG- -5'
11054 3' -53.1 NC_002794.1 + 37316 0.68 0.95448
Target:  5'- ------gGGGCAgAAgacggaGCGGugGGGCc -3'
miRNA:   3'- gguaaaaCCCGUgUUg-----CGCCugCCCG- -5'
11054 3' -53.1 NC_002794.1 + 38478 0.66 0.988021
Target:  5'- cCCuUUaUGGGCGgaggaAGCGCGG-CGGcGCc -3'
miRNA:   3'- -GGuAAaACCCGUg----UUGCGCCuGCC-CG- -5'
11054 3' -53.1 NC_002794.1 + 38661 0.68 0.965146
Target:  5'- aCUAUUUgacucccGcGCGCGAccCGCGGACGGGg -3'
miRNA:   3'- -GGUAAAac-----C-CGUGUU--GCGCCUGCCCg -5'
11054 3' -53.1 NC_002794.1 + 40113 0.66 0.988021
Target:  5'- aCGg---GGGCGCGcgagaGCGGAgagccaCGGGCu -3'
miRNA:   3'- gGUaaaaCCCGUGUug---CGCCU------GCCCG- -5'
11054 3' -53.1 NC_002794.1 + 42596 0.73 0.814087
Target:  5'- ------aGGGCGCGGCGgcCGGgaGCGGGCu -3'
miRNA:   3'- gguaaaaCCCGUGUUGC--GCC--UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 43998 0.72 0.855097
Target:  5'- aCGUgugGGaGCACGGCGCGGcCGGcGUc -3'
miRNA:   3'- gGUAaaaCC-CGUGUUGCGCCuGCC-CG- -5'
11054 3' -53.1 NC_002794.1 + 48052 0.73 0.805365
Target:  5'- gCGUgcUGGGCACGGCGCuGAUGGcCg -3'
miRNA:   3'- gGUAaaACCCGUGUUGCGcCUGCCcG- -5'
11054 3' -53.1 NC_002794.1 + 49242 0.7 0.921633
Target:  5'- gCCGUcgacGGGCGCccGCGCacccacGACGGGCg -3'
miRNA:   3'- -GGUAaaa-CCCGUGu-UGCGc-----CUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 50765 0.68 0.968273
Target:  5'- cCCGggcgGcGGCgACGGCGCGucuCGGGCg -3'
miRNA:   3'- -GGUaaaaC-CCG-UGUUGCGCcu-GCCCG- -5'
11054 3' -53.1 NC_002794.1 + 51259 0.67 0.973921
Target:  5'- gCGUgg-GGGCGgGccgggaggcagGCGCGGcccgcccgaACGGGCa -3'
miRNA:   3'- gGUAaaaCCCGUgU-----------UGCGCC---------UGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 53612 0.66 0.984805
Target:  5'- ------cGGGCcgccGCAGCGuCGGACGGa- -3'
miRNA:   3'- gguaaaaCCCG----UGUUGC-GCCUGCCcg -5'
11054 3' -53.1 NC_002794.1 + 54465 0.66 0.984805
Target:  5'- aCCGgacaccUUGGGgAUgAugGCGGugGcGGCu -3'
miRNA:   3'- -GGUaa----AACCCgUG-UugCGCCugC-CCG- -5'
11054 3' -53.1 NC_002794.1 + 55297 0.7 0.927028
Target:  5'- ------aGGGCggcgGCGGCGuCGcGGCGGGCg -3'
miRNA:   3'- gguaaaaCCCG----UGUUGC-GC-CUGCCCG- -5'
11054 3' -53.1 NC_002794.1 + 55797 0.69 0.9418
Target:  5'- uCCAgc--GaGCGCAGCGcCGGgcGCGGGCg -3'
miRNA:   3'- -GGUaaaaCcCGUGUUGC-GCC--UGCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.