Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11054 | 3' | -53.1 | NC_002794.1 | + | 91755 | 0.78 | 0.510572 |
Target: 5'- gCCGgcggGcGGCACcGCGCaGGACGGGCu -3' miRNA: 3'- -GGUaaaaC-CCGUGuUGCG-CCUGCCCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 38478 | 0.66 | 0.988021 |
Target: 5'- cCCuUUaUGGGCGgaggaAGCGCGG-CGGcGCc -3' miRNA: 3'- -GGuAAaACCCGUg----UUGCGCCuGCC-CG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 152813 | 0.66 | 0.986486 |
Target: 5'- cCCGaucgGGGUGCcgUGCGGACacGGCg -3' miRNA: 3'- -GGUaaaaCCCGUGuuGCGCCUGc-CCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 104518 | 0.66 | 0.986486 |
Target: 5'- ------cGGGCugAgGCGCGGGUGGcGCg -3' miRNA: 3'- gguaaaaCCCGugU-UGCGCCUGCC-CG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 190963 | 0.66 | 0.986486 |
Target: 5'- aCCAgcgccucgGGGCagcagagcagGCAGCGCGG-CGacGGCg -3' miRNA: 3'- -GGUaaaa----CCCG----------UGUUGCGCCuGC--CCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 102710 | 0.66 | 0.984805 |
Target: 5'- ------cGGGC-C-GC-CGGACGGGCg -3' miRNA: 3'- gguaaaaCCCGuGuUGcGCCUGCCCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 54465 | 0.66 | 0.984805 |
Target: 5'- aCCGgacaccUUGGGgAUgAugGCGGugGcGGCu -3' miRNA: 3'- -GGUaa----AACCCgUG-UugCGCCugC-CCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 53612 | 0.66 | 0.984805 |
Target: 5'- ------cGGGCcgccGCAGCGuCGGACGGa- -3' miRNA: 3'- gguaaaaCCCG----UGUUGC-GCCUGCCcg -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 131867 | 0.66 | 0.984271 |
Target: 5'- cCCGacucUUGGGCGCcgcggccucaucucGGuCGCGcGCGGGCa -3' miRNA: 3'- -GGUaa--AACCCGUG--------------UU-GCGCcUGCCCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 34734 | 0.66 | 0.988021 |
Target: 5'- ------cGGGCggccGCAgaGCGCGcGACGGcGCg -3' miRNA: 3'- gguaaaaCCCG----UGU--UGCGC-CUGCC-CG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 127931 | 0.66 | 0.988021 |
Target: 5'- -gAUUcgGGGCGUgucggucaugugGACGUGGACGuGGCu -3' miRNA: 3'- ggUAAaaCCCGUG------------UUGCGCCUGC-CCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 184016 | 0.66 | 0.988596 |
Target: 5'- aCCAUcgccGGccgccacggcaccgcGCGCAgcGCGCGGucGCGGGCc -3' miRNA: 3'- -GGUAaaa-CC---------------CGUGU--UGCGCC--UGCCCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 150175 | 0.66 | 0.990684 |
Target: 5'- gCCAgacc-GGCAgAccuuCGUGGugGGGCc -3' miRNA: 3'- -GGUaaaacCCGUgUu---GCGCCugCCCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 176694 | 0.66 | 0.990684 |
Target: 5'- gCCGUgcaaUGGGa--AACgGUGGACGGGa -3' miRNA: 3'- -GGUAaa--ACCCgugUUG-CGCCUGCCCg -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 32000 | 0.66 | 0.990684 |
Target: 5'- -----gUGGGCGagcCGACGCagaccaggcaggGGACGcGGCg -3' miRNA: 3'- gguaaaACCCGU---GUUGCG------------CCUGC-CCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 118294 | 0.66 | 0.990317 |
Target: 5'- aCCGcgccGGGCGCGuCGCucgucgucgucgucGcGACGGGCg -3' miRNA: 3'- -GGUaaaaCCCGUGUuGCG--------------C-CUGCCCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 94061 | 0.66 | 0.989418 |
Target: 5'- ------cGGGgGCGGCGgGGGgcgaGGGCa -3' miRNA: 3'- gguaaaaCCCgUGUUGCgCCUg---CCCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 140678 | 0.66 | 0.989284 |
Target: 5'- ------cGGGCGCAggucgguGCGaCGGACcGGCc -3' miRNA: 3'- gguaaaaCCCGUGU-------UGC-GCCUGcCCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 143391 | 0.66 | 0.989284 |
Target: 5'- ------aGGGuCAgcugcugcucgacCGGCGCGGGcCGGGCg -3' miRNA: 3'- gguaaaaCCC-GU-------------GUUGCGCCU-GCCCG- -5' |
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11054 | 3' | -53.1 | NC_002794.1 | + | 40113 | 0.66 | 0.988021 |
Target: 5'- aCGg---GGGCGCGcgagaGCGGAgagccaCGGGCu -3' miRNA: 3'- gGUaaaaCCCGUGUug---CGCCU------GCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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