miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11054 5' -56.5 NC_002794.1 + 191659 0.66 0.932109
Target:  5'- cCGCCGGgggACgGCgCCGGCAgcgGCGGc- -3'
miRNA:   3'- cGCGGCU---UGgCGaGGUCGUa--UGCCau -5'
11054 5' -56.5 NC_002794.1 + 3813 0.66 0.932109
Target:  5'- gGUGCC-AACCGCcCCcGCAgagGCGGa- -3'
miRNA:   3'- -CGCGGcUUGGCGaGGuCGUa--UGCCau -5'
11054 5' -56.5 NC_002794.1 + 41688 0.66 0.931608
Target:  5'- aGCGcCCGGACCGCcggaucgUCCcgGGCGcGCaGGUAc -3'
miRNA:   3'- -CGC-GGCUUGGCG-------AGG--UCGUaUG-CCAU- -5'
11054 5' -56.5 NC_002794.1 + 43284 0.66 0.926991
Target:  5'- cGCuGCCG-GCUGUccUCCAGCAcccggGCGGUc -3'
miRNA:   3'- -CG-CGGCuUGGCG--AGGUCGUa----UGCCAu -5'
11054 5' -56.5 NC_002794.1 + 53046 0.66 0.926991
Target:  5'- gGUGCC--GCgGCUCCAGCGUA-GGc- -3'
miRNA:   3'- -CGCGGcuUGgCGAGGUCGUAUgCCau -5'
11054 5' -56.5 NC_002794.1 + 126069 0.66 0.921641
Target:  5'- cGCGCCuGGCCuGgaCCGGCcUGCGGc- -3'
miRNA:   3'- -CGCGGcUUGG-CgaGGUCGuAUGCCau -5'
11054 5' -56.5 NC_002794.1 + 62749 0.66 0.921641
Target:  5'- cGCgGCCGucUCGCUCCGGCuc-CGGc- -3'
miRNA:   3'- -CG-CGGCuuGGCGAGGUCGuauGCCau -5'
11054 5' -56.5 NC_002794.1 + 53069 0.66 0.921641
Target:  5'- aGCGCCGcGCCGC--CAGCucGCGGc- -3'
miRNA:   3'- -CGCGGCuUGGCGagGUCGuaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 86972 0.66 0.921094
Target:  5'- uGCGgCGAGCUGCgacgaggUCCGGCGgcuuucgGCGGc- -3'
miRNA:   3'- -CGCgGCUUGGCG-------AGGUCGUa------UGCCau -5'
11054 5' -56.5 NC_002794.1 + 82928 0.66 0.919991
Target:  5'- cCGCCGucGCCGCUCCGacuccaggcccgccGCGcACGGc- -3'
miRNA:   3'- cGCGGCu-UGGCGAGGU--------------CGUaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 72062 0.66 0.91832
Target:  5'- cGCaGCCGGuugcCCGCgugcccuucguacaCCGGCAcGCGGUAg -3'
miRNA:   3'- -CG-CGGCUu---GGCGa-------------GGUCGUaUGCCAU- -5'
11054 5' -56.5 NC_002794.1 + 14664 0.66 0.91606
Target:  5'- gGCGUCGGuCCGaCUCgCGGCG-GCGGUc -3'
miRNA:   3'- -CGCGGCUuGGC-GAG-GUCGUaUGCCAu -5'
11054 5' -56.5 NC_002794.1 + 19818 0.66 0.91606
Target:  5'- cGCGCCGGacuggaucaaGCUGCUgcaCGGC-UACGGg- -3'
miRNA:   3'- -CGCGGCU----------UGGCGAg--GUCGuAUGCCau -5'
11054 5' -56.5 NC_002794.1 + 53604 0.66 0.91606
Target:  5'- gGCGucaCCGGGCCGC-CgCAGCGUcggACGGa- -3'
miRNA:   3'- -CGC---GGCUUGGCGaG-GUCGUA---UGCCau -5'
11054 5' -56.5 NC_002794.1 + 63244 0.66 0.91606
Target:  5'- cGCGCCGAACgGgacuuuCUCCGGacgACGGc- -3'
miRNA:   3'- -CGCGGCUUGgC------GAGGUCguaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 71742 0.66 0.91606
Target:  5'- aCGCCGAagGCCGCcgCCGGCucuuccgacCGGUc -3'
miRNA:   3'- cGCGGCU--UGGCGa-GGUCGuau------GCCAu -5'
11054 5' -56.5 NC_002794.1 + 114156 0.66 0.91606
Target:  5'- gGCGCCGcgucAGCCGCUCCAagaGC---UGGUu -3'
miRNA:   3'- -CGCGGC----UUGGCGAGGU---CGuauGCCAu -5'
11054 5' -56.5 NC_002794.1 + 67562 0.66 0.91606
Target:  5'- cGCGCCGcaccaaAGCCGa-CCGGUcgGCGGa- -3'
miRNA:   3'- -CGCGGC------UUGGCgaGGUCGuaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 186001 0.66 0.91606
Target:  5'- cCGCCGGgcuccGCCGCUCCGGgcc-CGGg- -3'
miRNA:   3'- cGCGGCU-----UGGCGAGGUCguauGCCau -5'
11054 5' -56.5 NC_002794.1 + 146990 0.66 0.91606
Target:  5'- gGCGCCGccGGCCGacgUCGGCGgcgGCGGc- -3'
miRNA:   3'- -CGCGGC--UUGGCga-GGUCGUa--UGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.