miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11054 5' -56.5 NC_002794.1 + 116891 0.78 0.326583
Target:  5'- gGCGCCGGcGCCGuCUCCGGCGgcCGGUc -3'
miRNA:   3'- -CGCGGCU-UGGC-GAGGUCGUauGCCAu -5'
11054 5' -56.5 NC_002794.1 + 152137 0.76 0.397054
Target:  5'- cUGCCGAGCCgguucaacccGCUCCAGCGccUGCGGg- -3'
miRNA:   3'- cGCGGCUUGG----------CGAGGUCGU--AUGCCau -5'
11054 5' -56.5 NC_002794.1 + 183562 0.76 0.397054
Target:  5'- cGCGCCGAGCCGCcgacaCgGGCcuuuaAUACGGUGg -3'
miRNA:   3'- -CGCGGCUUGGCGa----GgUCG-----UAUGCCAU- -5'
11054 5' -56.5 NC_002794.1 + 194357 0.75 0.485903
Target:  5'- gGCGCCagGAACCGCUCCcGCGUGCc--- -3'
miRNA:   3'- -CGCGG--CUUGGCGAGGuCGUAUGccau -5'
11054 5' -56.5 NC_002794.1 + 156407 0.72 0.603175
Target:  5'- gGCGCCGcGGCCGCggccaCGGCcgGCGGg- -3'
miRNA:   3'- -CGCGGC-UUGGCGag---GUCGuaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 113560 0.72 0.612224
Target:  5'- gGCGCCGGACCGUcugcgucucggcgUCCuGCAcgACGGc- -3'
miRNA:   3'- -CGCGGCUUGGCG-------------AGGuCGUa-UGCCau -5'
11054 5' -56.5 NC_002794.1 + 117522 0.72 0.6233
Target:  5'- uGCGCCGGcgcauCUGCUCCAGguUGCcGUGc -3'
miRNA:   3'- -CGCGGCUu----GGCGAGGUCguAUGcCAU- -5'
11054 5' -56.5 NC_002794.1 + 100818 0.72 0.64345
Target:  5'- cGUGCCGGGCgGCgggggCCGGCAgcCGGg- -3'
miRNA:   3'- -CGCGGCUUGgCGa----GGUCGUauGCCau -5'
11054 5' -56.5 NC_002794.1 + 63916 0.72 0.64345
Target:  5'- cGCGCCGcGACCGCcgcCCGGCcgGCGaGUc -3'
miRNA:   3'- -CGCGGC-UUGGCGa--GGUCGuaUGC-CAu -5'
11054 5' -56.5 NC_002794.1 + 180668 0.72 0.653516
Target:  5'- cGUGCCGGggaacucgccgGCCGCUcCCGGCGcccgGCGGg- -3'
miRNA:   3'- -CGCGGCU-----------UGGCGA-GGUCGUa---UGCCau -5'
11054 5' -56.5 NC_002794.1 + 90955 0.71 0.663566
Target:  5'- uGCGCCGAGgcccgggcCCGCUUCGGCGUGgccucguacCGGg- -3'
miRNA:   3'- -CGCGGCUU--------GGCGAGGUCGUAU---------GCCau -5'
11054 5' -56.5 NC_002794.1 + 182074 0.71 0.673591
Target:  5'- uGCGuCCGGucggccACCGCcagCCAGCGUucuucGCGGUAg -3'
miRNA:   3'- -CGC-GGCU------UGGCGa--GGUCGUA-----UGCCAU- -5'
11054 5' -56.5 NC_002794.1 + 121957 0.71 0.683583
Target:  5'- aGCGCCuGGAgCGCUCCGuGCGgcuCGGUc -3'
miRNA:   3'- -CGCGG-CUUgGCGAGGU-CGUau-GCCAu -5'
11054 5' -56.5 NC_002794.1 + 143280 0.71 0.697501
Target:  5'- gGCGCCG-GCCGCUCggggucgggcgggugCAGCGcgGCGGg- -3'
miRNA:   3'- -CGCGGCuUGGCGAG---------------GUCGUa-UGCCau -5'
11054 5' -56.5 NC_002794.1 + 104904 0.71 0.703435
Target:  5'- gGCGCCGuGCUGCUCgAGCAgGCGc-- -3'
miRNA:   3'- -CGCGGCuUGGCGAGgUCGUaUGCcau -5'
11054 5' -56.5 NC_002794.1 + 137650 0.7 0.712297
Target:  5'- gGCGCCGGGCC--UCCGGCgccgcugGUGCGGa- -3'
miRNA:   3'- -CGCGGCUUGGcgAGGUCG-------UAUGCCau -5'
11054 5' -56.5 NC_002794.1 + 190222 0.7 0.712297
Target:  5'- cCGCCGGG-CGCUCCGGUcguccauGUGCGGa- -3'
miRNA:   3'- cGCGGCUUgGCGAGGUCG-------UAUGCCau -5'
11054 5' -56.5 NC_002794.1 + 129231 0.7 0.713278
Target:  5'- gGCGCgaaCGGGCgGCUCCGGCGgacuCGGg- -3'
miRNA:   3'- -CGCG---GCUUGgCGAGGUCGUau--GCCau -5'
11054 5' -56.5 NC_002794.1 + 145921 0.7 0.713278
Target:  5'- cGCGCCGAGCgGaggggCCGGCGagaGCGGUu -3'
miRNA:   3'- -CGCGGCUUGgCga---GGUCGUa--UGCCAu -5'
11054 5' -56.5 NC_002794.1 + 34061 0.7 0.713278
Target:  5'- cGCGCaCGAcccGCCGUUCCcGCcgGCGGc- -3'
miRNA:   3'- -CGCG-GCU---UGGCGAGGuCGuaUGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.