miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11054 5' -56.5 NC_002794.1 + 190308 0.66 0.91606
Target:  5'- gGCgGCCGAACaccaGCUUCAGCAgccccAUGGc- -3'
miRNA:   3'- -CG-CGGCUUGg---CGAGGUCGUa----UGCCau -5'
11054 5' -56.5 NC_002794.1 + 152042 0.66 0.915489
Target:  5'- aCGCCGAguucgcgACCGCggCCGGCAaaUACcGGa- -3'
miRNA:   3'- cGCGGCU-------UGGCGa-GGUCGU--AUG-CCau -5'
11054 5' -56.5 NC_002794.1 + 9335 0.66 0.910249
Target:  5'- aCGCgGGugCGUgcgCCGGCAcgACGGUc -3'
miRNA:   3'- cGCGgCUugGCGa--GGUCGUa-UGCCAu -5'
11054 5' -56.5 NC_002794.1 + 191372 0.66 0.910249
Target:  5'- cGgGCCGGACC-CUCCGcGCccGCGGc- -3'
miRNA:   3'- -CgCGGCUUGGcGAGGU-CGuaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 17665 0.66 0.910249
Target:  5'- cCGCCGccACCGCcgCCGGCcccgGCGGa- -3'
miRNA:   3'- cGCGGCu-UGGCGa-GGUCGua--UGCCau -5'
11054 5' -56.5 NC_002794.1 + 187446 0.66 0.910249
Target:  5'- cGCGCCGucuGCCGCcgCuCGGCGUcgcuCGGc- -3'
miRNA:   3'- -CGCGGCu--UGGCGa-G-GUCGUAu---GCCau -5'
11054 5' -56.5 NC_002794.1 + 39707 0.66 0.910249
Target:  5'- cCGCCGGcgcuaccgACCGCUgCAGCAUcACGa-- -3'
miRNA:   3'- cGCGGCU--------UGGCGAgGUCGUA-UGCcau -5'
11054 5' -56.5 NC_002794.1 + 92043 0.66 0.909655
Target:  5'- uGCGCCguGAACCuGUgUCCGGCGUGCcgcggccGGUGc -3'
miRNA:   3'- -CGCGG--CUUGG-CG-AGGUCGUAUG-------CCAU- -5'
11054 5' -56.5 NC_002794.1 + 182129 0.66 0.904208
Target:  5'- -aGCCGAACCGCgCCAaGuCGUcgcACGGg- -3'
miRNA:   3'- cgCGGCUUGGCGaGGU-C-GUA---UGCCau -5'
11054 5' -56.5 NC_002794.1 + 13959 0.66 0.904208
Target:  5'- cGUGUCGAGCCGCUCgGagacguucGC-UGCGGc- -3'
miRNA:   3'- -CGCGGCUUGGCGAGgU--------CGuAUGCCau -5'
11054 5' -56.5 NC_002794.1 + 135745 0.66 0.904208
Target:  5'- cGCGCCGcGCC-CUCgAGgAUcagGCGGUGc -3'
miRNA:   3'- -CGCGGCuUGGcGAGgUCgUA---UGCCAU- -5'
11054 5' -56.5 NC_002794.1 + 137384 0.66 0.904208
Target:  5'- aGCGCCGA--CGCggguccggucugUCCGGCGUccGCGGa- -3'
miRNA:   3'- -CGCGGCUugGCG------------AGGUCGUA--UGCCau -5'
11054 5' -56.5 NC_002794.1 + 92731 0.66 0.903591
Target:  5'- cGCGCUG-GCUGCUgCAGCAcuuccaguccaucUGCGGc- -3'
miRNA:   3'- -CGCGGCuUGGCGAgGUCGU-------------AUGCCau -5'
11054 5' -56.5 NC_002794.1 + 150817 0.66 0.902351
Target:  5'- -gGCCGAGCCGCUggagcugaucgucgUCAGCuccaGCGGc- -3'
miRNA:   3'- cgCGGCUUGGCGA--------------GGUCGua--UGCCau -5'
11054 5' -56.5 NC_002794.1 + 29929 0.67 0.89794
Target:  5'- aGCGaCGAGCCGCcgUCCGGgAaGCGGc- -3'
miRNA:   3'- -CGCgGCUUGGCG--AGGUCgUaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 58042 0.67 0.89794
Target:  5'- cGCGCCGcccguccccgucGGCgGCcCCGGCGgcgGCGGg- -3'
miRNA:   3'- -CGCGGC------------UUGgCGaGGUCGUa--UGCCau -5'
11054 5' -56.5 NC_002794.1 + 145729 0.67 0.89794
Target:  5'- gGCGCUGGagGCgGCggcgCCGGCAUcgACGGc- -3'
miRNA:   3'- -CGCGGCU--UGgCGa---GGUCGUA--UGCCau -5'
11054 5' -56.5 NC_002794.1 + 184452 0.67 0.89794
Target:  5'- cGCGCCGcugccgcccgcgGGCCGCgcgaaCGGCGcGCGGg- -3'
miRNA:   3'- -CGCGGC------------UUGGCGag---GUCGUaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 152981 0.67 0.897301
Target:  5'- gGCGCUucGCCGacaggcgucguauCUCCAGCAcgGCGGa- -3'
miRNA:   3'- -CGCGGcuUGGC-------------GAGGUCGUa-UGCCau -5'
11054 5' -56.5 NC_002794.1 + 47961 0.67 0.897301
Target:  5'- gGCGCCGGcugggcgaccgccGCgCGCUCCuccgacccgacgAGCGUGCaGUGg -3'
miRNA:   3'- -CGCGGCU-------------UG-GCGAGG------------UCGUAUGcCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.