miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11054 5' -56.5 NC_002794.1 + 3813 0.66 0.932109
Target:  5'- gGUGCC-AACCGCcCCcGCAgagGCGGa- -3'
miRNA:   3'- -CGCGGcUUGGCGaGGuCGUa--UGCCau -5'
11054 5' -56.5 NC_002794.1 + 9335 0.66 0.910249
Target:  5'- aCGCgGGugCGUgcgCCGGCAcgACGGUc -3'
miRNA:   3'- cGCGgCUugGCGa--GGUCGUa-UGCCAu -5'
11054 5' -56.5 NC_002794.1 + 13668 0.69 0.806577
Target:  5'- cGUGCCGccGCCaCUCCGGUcgACGGa- -3'
miRNA:   3'- -CGCGGCu-UGGcGAGGUCGuaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 13959 0.66 0.904208
Target:  5'- cGUGUCGAGCCGCUCgGagacguucGC-UGCGGc- -3'
miRNA:   3'- -CGCGGCUUGGCGAGgU--------CGuAUGCCau -5'
11054 5' -56.5 NC_002794.1 + 14605 0.69 0.797798
Target:  5'- cGCGCCGGgcACCGCgacggggCCGGag-ACGGg- -3'
miRNA:   3'- -CGCGGCU--UGGCGa------GGUCguaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 14664 0.66 0.91606
Target:  5'- gGCGUCGGuCCGaCUCgCGGCG-GCGGUc -3'
miRNA:   3'- -CGCGGCUuGGC-GAG-GUCGUaUGCCAu -5'
11054 5' -56.5 NC_002794.1 + 17665 0.66 0.910249
Target:  5'- cCGCCGccACCGCcgCCGGCcccgGCGGa- -3'
miRNA:   3'- cGCGGCu-UGGCGa-GGUCGua--UGCCau -5'
11054 5' -56.5 NC_002794.1 + 17842 0.7 0.723055
Target:  5'- uGCaCCGAGCCGCUCCuGacggagAUGCGGa- -3'
miRNA:   3'- -CGcGGCUUGGCGAGGuCg-----UAUGCCau -5'
11054 5' -56.5 NC_002794.1 + 18681 0.7 0.751893
Target:  5'- gGCuGCCGccGCCGuCUCCGGCAcgGCGGc- -3'
miRNA:   3'- -CG-CGGCu-UGGC-GAGGUCGUa-UGCCau -5'
11054 5' -56.5 NC_002794.1 + 19818 0.66 0.91606
Target:  5'- cGCGCCGGacuggaucaaGCUGCUgcaCGGC-UACGGg- -3'
miRNA:   3'- -CGCGGCU----------UGGCGAg--GUCGuAUGCCau -5'
11054 5' -56.5 NC_002794.1 + 29754 0.69 0.788873
Target:  5'- gGCGCCGAGcCCGCgCCgAGCGUcuCGGc- -3'
miRNA:   3'- -CGCGGCUU-GGCGaGG-UCGUAu-GCCau -5'
11054 5' -56.5 NC_002794.1 + 29929 0.67 0.89794
Target:  5'- aGCGaCGAGCCGCcgUCCGGgAaGCGGc- -3'
miRNA:   3'- -CGCgGCUUGGCG--AGGUCgUaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 31756 0.67 0.884737
Target:  5'- aGCGgucgauguacUCGAugUGCUCCGGgGUcaGCGGUAg -3'
miRNA:   3'- -CGC----------GGCUugGCGAGGUCgUA--UGCCAU- -5'
11054 5' -56.5 NC_002794.1 + 34061 0.7 0.713278
Target:  5'- cGCGCaCGAcccGCCGUUCCcGCcgGCGGc- -3'
miRNA:   3'- -CGCG-GCU---UGGCGAGGuCGuaUGCCau -5'
11054 5' -56.5 NC_002794.1 + 36836 0.67 0.884737
Target:  5'- gGCcCCGGACCGuCUCguaGGUGUGCGGa- -3'
miRNA:   3'- -CGcGGCUUGGC-GAGg--UCGUAUGCCau -5'
11054 5' -56.5 NC_002794.1 + 39707 0.66 0.910249
Target:  5'- cCGCCGGcgcuaccgACCGCUgCAGCAUcACGa-- -3'
miRNA:   3'- cGCGGCU--------UGGCGAgGUCGUA-UGCcau -5'
11054 5' -56.5 NC_002794.1 + 40780 0.69 0.814348
Target:  5'- gGCGUCGAGCUGgUCacauagucguuuaCAGCAUugGGa- -3'
miRNA:   3'- -CGCGGCUUGGCgAG-------------GUCGUAugCCau -5'
11054 5' -56.5 NC_002794.1 + 41688 0.66 0.931608
Target:  5'- aGCGcCCGGACCGCcggaucgUCCcgGGCGcGCaGGUAc -3'
miRNA:   3'- -CGC-GGCUUGGCG-------AGG--UCGUaUG-CCAU- -5'
11054 5' -56.5 NC_002794.1 + 43284 0.66 0.926991
Target:  5'- cGCuGCCG-GCUGUccUCCAGCAcccggGCGGUc -3'
miRNA:   3'- -CG-CGGCuUGGCG--AGGUCGUa----UGCCAu -5'
11054 5' -56.5 NC_002794.1 + 44105 0.7 0.723055
Target:  5'- uGCGCCGAcgagcGCCGCaUCAGCucGCGGc- -3'
miRNA:   3'- -CGCGGCU-----UGGCGaGGUCGuaUGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.