Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11054 | 5' | -56.5 | NC_002794.1 | + | 116891 | 0.78 | 0.326583 |
Target: 5'- gGCGCCGGcGCCGuCUCCGGCGgcCGGUc -3' miRNA: 3'- -CGCGGCU-UGGC-GAGGUCGUauGCCAu -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 146990 | 0.66 | 0.91606 |
Target: 5'- gGCGCCGccGGCCGacgUCGGCGgcgGCGGc- -3' miRNA: 3'- -CGCGGC--UUGGCga-GGUCGUa--UGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 186001 | 0.66 | 0.91606 |
Target: 5'- cCGCCGGgcuccGCCGCUCCGGgcc-CGGg- -3' miRNA: 3'- cGCGGCU-----UGGCGAGGUCguauGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 67562 | 0.66 | 0.91606 |
Target: 5'- cGCGCCGcaccaaAGCCGa-CCGGUcgGCGGa- -3' miRNA: 3'- -CGCGGC------UUGGCgaGGUCGuaUGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 114156 | 0.66 | 0.91606 |
Target: 5'- gGCGCCGcgucAGCCGCUCCAagaGC---UGGUu -3' miRNA: 3'- -CGCGGC----UUGGCGAGGU---CGuauGCCAu -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 71742 | 0.66 | 0.91606 |
Target: 5'- aCGCCGAagGCCGCcgCCGGCucuuccgacCGGUc -3' miRNA: 3'- cGCGGCU--UGGCGa-GGUCGuau------GCCAu -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 63244 | 0.66 | 0.91606 |
Target: 5'- cGCGCCGAACgGgacuuuCUCCGGacgACGGc- -3' miRNA: 3'- -CGCGGCUUGgC------GAGGUCguaUGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 53604 | 0.66 | 0.91606 |
Target: 5'- gGCGucaCCGGGCCGC-CgCAGCGUcggACGGa- -3' miRNA: 3'- -CGC---GGCUUGGCGaG-GUCGUA---UGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 19818 | 0.66 | 0.91606 |
Target: 5'- cGCGCCGGacuggaucaaGCUGCUgcaCGGC-UACGGg- -3' miRNA: 3'- -CGCGGCU----------UGGCGAg--GUCGuAUGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 190308 | 0.66 | 0.91606 |
Target: 5'- gGCgGCCGAACaccaGCUUCAGCAgccccAUGGc- -3' miRNA: 3'- -CG-CGGCUUGg---CGAGGUCGUa----UGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 72062 | 0.66 | 0.91832 |
Target: 5'- cGCaGCCGGuugcCCGCgugcccuucguacaCCGGCAcGCGGUAg -3' miRNA: 3'- -CG-CGGCUu---GGCGa-------------GGUCGUaUGCCAU- -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 53069 | 0.66 | 0.921641 |
Target: 5'- aGCGCCGcGCCGC--CAGCucGCGGc- -3' miRNA: 3'- -CGCGGCuUGGCGagGUCGuaUGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 3813 | 0.66 | 0.932109 |
Target: 5'- gGUGCC-AACCGCcCCcGCAgagGCGGa- -3' miRNA: 3'- -CGCGGcUUGGCGaGGuCGUa--UGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 41688 | 0.66 | 0.931608 |
Target: 5'- aGCGcCCGGACCGCcggaucgUCCcgGGCGcGCaGGUAc -3' miRNA: 3'- -CGC-GGCUUGGCG-------AGG--UCGUaUG-CCAU- -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 43284 | 0.66 | 0.926991 |
Target: 5'- cGCuGCCG-GCUGUccUCCAGCAcccggGCGGUc -3' miRNA: 3'- -CG-CGGCuUGGCG--AGGUCGUa----UGCCAu -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 53046 | 0.66 | 0.926991 |
Target: 5'- gGUGCC--GCgGCUCCAGCGUA-GGc- -3' miRNA: 3'- -CGCGGcuUGgCGAGGUCGUAUgCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 62749 | 0.66 | 0.921641 |
Target: 5'- cGCgGCCGucUCGCUCCGGCuc-CGGc- -3' miRNA: 3'- -CG-CGGCuuGGCGAGGUCGuauGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 126069 | 0.66 | 0.921641 |
Target: 5'- cGCGCCuGGCCuGgaCCGGCcUGCGGc- -3' miRNA: 3'- -CGCGGcUUGG-CgaGGUCGuAUGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 82928 | 0.66 | 0.919991 |
Target: 5'- cCGCCGucGCCGCUCCGacuccaggcccgccGCGcACGGc- -3' miRNA: 3'- cGCGGCu-UGGCGAGGU--------------CGUaUGCCau -5' |
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11054 | 5' | -56.5 | NC_002794.1 | + | 86972 | 0.66 | 0.921094 |
Target: 5'- uGCGgCGAGCUGCgacgaggUCCGGCGgcuuucgGCGGc- -3' miRNA: 3'- -CGCgGCUUGGCG-------AGGUCGUa------UGCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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