miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11055 3' -56.6 NC_002794.1 + 89814 0.66 0.943613
Target:  5'- cGCGU-GUGGGGUGCGUccuggggaACGagucGGUCGg -3'
miRNA:   3'- -CGCAgCAUCCCGCGCG--------UGCa---CUAGCa -5'
11055 3' -56.6 NC_002794.1 + 21708 0.66 0.939125
Target:  5'- gGCGUCcacGGGCGCuGCGuCGcGAUCGc -3'
miRNA:   3'- -CGCAGcauCCCGCG-CGU-GCaCUAGCa -5'
11055 3' -56.6 NC_002794.1 + 103088 0.66 0.939125
Target:  5'- aGCGUCGcGGccCGCGCGCGcGGUCa- -3'
miRNA:   3'- -CGCAGCaUCccGCGCGUGCaCUAGca -5'
11055 3' -56.6 NC_002794.1 + 158746 0.66 0.924321
Target:  5'- cCGg-GUAGuGuGCGCGCACGUGGugaUCGg -3'
miRNA:   3'- cGCagCAUC-C-CGCGCGUGCACU---AGCa -5'
11055 3' -56.6 NC_002794.1 + 118284 0.66 0.923262
Target:  5'- gGCGUCGgggaccgcgccGGGCGCGUcgcuCGUcGUCGUc -3'
miRNA:   3'- -CGCAGCau---------CCCGCGCGu---GCAcUAGCA- -5'
11055 3' -56.6 NC_002794.1 + 192556 0.67 0.907495
Target:  5'- cCGUCGUAGcGGCagGCGCACGcGAa--- -3'
miRNA:   3'- cGCAGCAUC-CCG--CGCGUGCaCUagca -5'
11055 3' -56.6 NC_002794.1 + 55809 0.67 0.907495
Target:  5'- aGCGcCGggcgcGGGCGCGCGC-UGAUgGc -3'
miRNA:   3'- -CGCaGCau---CCCGCGCGUGcACUAgCa -5'
11055 3' -56.6 NC_002794.1 + 87874 0.67 0.888681
Target:  5'- cGUGUgCGUAuaGuCGCGCACGUGcgCGUa -3'
miRNA:   3'- -CGCA-GCAUccC-GCGCGUGCACuaGCA- -5'
11055 3' -56.6 NC_002794.1 + 153349 0.67 0.88802
Target:  5'- cGUGUUGUcAGGacgcggcccggcuGCGCGCccuCGUGGUCGa -3'
miRNA:   3'- -CGCAGCA-UCC-------------CGCGCGu--GCACUAGCa -5'
11055 3' -56.6 NC_002794.1 + 116957 0.68 0.86064
Target:  5'- gGCGUCGgcGGGCGCaggaACGggcccagcaGGUCGUu -3'
miRNA:   3'- -CGCAGCauCCCGCGcg--UGCa--------CUAGCA- -5'
11055 3' -56.6 NC_002794.1 + 68910 0.68 0.86064
Target:  5'- cGCGUCGcGGGGCuCGCgGCGUccUCGUc -3'
miRNA:   3'- -CGCAGCaUCCCGcGCG-UGCAcuAGCA- -5'
11055 3' -56.6 NC_002794.1 + 146857 0.68 0.843091
Target:  5'- cGCGUCGUucgcguucggguggGGGGCGCGguCGgccgaUGAUUa- -3'
miRNA:   3'- -CGCAGCA--------------UCCCGCGCguGC-----ACUAGca -5'
11055 3' -56.6 NC_002794.1 + 145230 0.69 0.837557
Target:  5'- gGUGUCGga-GGCGCGCGCGcugcggaagcgGAUCGc -3'
miRNA:   3'- -CGCAGCaucCCGCGCGUGCa----------CUAGCa -5'
11055 3' -56.6 NC_002794.1 + 49031 0.69 0.837557
Target:  5'- gGCGUCGUccGGCGCGguCGUcagCGUc -3'
miRNA:   3'- -CGCAGCAucCCGCGCguGCAcuaGCA- -5'
11055 3' -56.6 NC_002794.1 + 111171 0.69 0.812893
Target:  5'- cGCGgUGcAGGGCGCGCACGaacUCGa -3'
miRNA:   3'- -CGCaGCaUCCCGCGCGUGCacuAGCa -5'
11055 3' -56.6 NC_002794.1 + 140649 0.69 0.795667
Target:  5'- aCGUCGUGGGcuGCGCGCAgcuuuUG-GGUCGg -3'
miRNA:   3'- cGCAGCAUCC--CGCGCGU-----GCaCUAGCa -5'
11055 3' -56.6 NC_002794.1 + 143959 0.7 0.763303
Target:  5'- cGUGUUcUGGGGCGUGCugGUcaacggcuaccuggaGAUCGa -3'
miRNA:   3'- -CGCAGcAUCCCGCGCGugCA---------------CUAGCa -5'
11055 3' -56.6 NC_002794.1 + 37267 0.71 0.712218
Target:  5'- cCGUCGgcGGGCGCGCggGCGcGG-CGUa -3'
miRNA:   3'- cGCAGCauCCCGCGCG--UGCaCUaGCA- -5'
11055 3' -56.6 NC_002794.1 + 182059 0.73 0.603713
Target:  5'- uGCG-CGUAGGGCGCcUGCGUccGGUCGg -3'
miRNA:   3'- -CGCaGCAUCCCGCGcGUGCA--CUAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.