Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11055 | 3' | -56.6 | NC_002794.1 | + | 182059 | 0.73 | 0.603713 |
Target: 5'- uGCG-CGUAGGGCGCcUGCGUccGGUCGg -3' miRNA: 3'- -CGCaGCAUCCCGCGcGUGCA--CUAGCa -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 37267 | 0.71 | 0.712218 |
Target: 5'- cCGUCGgcGGGCGCGCggGCGcGG-CGUa -3' miRNA: 3'- cGCAGCauCCCGCGCG--UGCaCUaGCA- -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 143959 | 0.7 | 0.763303 |
Target: 5'- cGUGUUcUGGGGCGUGCugGUcaacggcuaccuggaGAUCGa -3' miRNA: 3'- -CGCAGcAUCCCGCGCGugCA---------------CUAGCa -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 140649 | 0.69 | 0.795667 |
Target: 5'- aCGUCGUGGGcuGCGCGCAgcuuuUG-GGUCGg -3' miRNA: 3'- cGCAGCAUCC--CGCGCGU-----GCaCUAGCa -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 111171 | 0.69 | 0.812893 |
Target: 5'- cGCGgUGcAGGGCGCGCACGaacUCGa -3' miRNA: 3'- -CGCaGCaUCCCGCGCGUGCacuAGCa -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 49031 | 0.69 | 0.837557 |
Target: 5'- gGCGUCGUccGGCGCGguCGUcagCGUc -3' miRNA: 3'- -CGCAGCAucCCGCGCguGCAcuaGCA- -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 145230 | 0.69 | 0.837557 |
Target: 5'- gGUGUCGga-GGCGCGCGCGcugcggaagcgGAUCGc -3' miRNA: 3'- -CGCAGCaucCCGCGCGUGCa----------CUAGCa -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 146857 | 0.68 | 0.843091 |
Target: 5'- cGCGUCGUucgcguucggguggGGGGCGCGguCGgccgaUGAUUa- -3' miRNA: 3'- -CGCAGCA--------------UCCCGCGCguGC-----ACUAGca -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 116957 | 0.68 | 0.86064 |
Target: 5'- gGCGUCGgcGGGCGCaggaACGggcccagcaGGUCGUu -3' miRNA: 3'- -CGCAGCauCCCGCGcg--UGCa--------CUAGCA- -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 68910 | 0.68 | 0.86064 |
Target: 5'- cGCGUCGcGGGGCuCGCgGCGUccUCGUc -3' miRNA: 3'- -CGCAGCaUCCCGcGCG-UGCAcuAGCA- -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 153349 | 0.67 | 0.88802 |
Target: 5'- cGUGUUGUcAGGacgcggcccggcuGCGCGCccuCGUGGUCGa -3' miRNA: 3'- -CGCAGCA-UCC-------------CGCGCGu--GCACUAGCa -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 87874 | 0.67 | 0.888681 |
Target: 5'- cGUGUgCGUAuaGuCGCGCACGUGcgCGUa -3' miRNA: 3'- -CGCA-GCAUccC-GCGCGUGCACuaGCA- -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 55809 | 0.67 | 0.907495 |
Target: 5'- aGCGcCGggcgcGGGCGCGCGC-UGAUgGc -3' miRNA: 3'- -CGCaGCau---CCCGCGCGUGcACUAgCa -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 192556 | 0.67 | 0.907495 |
Target: 5'- cCGUCGUAGcGGCagGCGCACGcGAa--- -3' miRNA: 3'- cGCAGCAUC-CCG--CGCGUGCaCUagca -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 118284 | 0.66 | 0.923262 |
Target: 5'- gGCGUCGgggaccgcgccGGGCGCGUcgcuCGUcGUCGUc -3' miRNA: 3'- -CGCAGCau---------CCCGCGCGu---GCAcUAGCA- -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 158746 | 0.66 | 0.924321 |
Target: 5'- cCGg-GUAGuGuGCGCGCACGUGGugaUCGg -3' miRNA: 3'- cGCagCAUC-C-CGCGCGUGCACU---AGCa -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 103088 | 0.66 | 0.939125 |
Target: 5'- aGCGUCGcGGccCGCGCGCGcGGUCa- -3' miRNA: 3'- -CGCAGCaUCccGCGCGUGCaCUAGca -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 21708 | 0.66 | 0.939125 |
Target: 5'- gGCGUCcacGGGCGCuGCGuCGcGAUCGc -3' miRNA: 3'- -CGCAGcauCCCGCG-CGU-GCaCUAGCa -5' |
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11055 | 3' | -56.6 | NC_002794.1 | + | 89814 | 0.66 | 0.943613 |
Target: 5'- cGCGU-GUGGGGUGCGUccuggggaACGagucGGUCGg -3' miRNA: 3'- -CGCAgCAUCCCGCGCG--------UGCa---CUAGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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