miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11055 5' -53.2 NC_002794.1 + 117047 0.65 0.989339
Target:  5'- aGCACGAgguacgggccGUCCGUGagCCUcggguacggcggcaGCGGCGUGu -3'
miRNA:   3'- -CGUGCUa---------CAGGCAUg-GGA--------------CGCUGUAC- -5'
11055 5' -53.2 NC_002794.1 + 56319 0.66 0.983401
Target:  5'- cGCugGcgG-CCGUGgCCgGCGACGc- -3'
miRNA:   3'- -CGugCuaCaGGCAUgGGaCGCUGUac -5'
11055 5' -53.2 NC_002794.1 + 179616 0.66 0.983401
Target:  5'- gGCGCGAgcgacugCCGgGCgCUGCGACGg- -3'
miRNA:   3'- -CGUGCUaca----GGCaUGgGACGCUGUac -5'
11055 5' -53.2 NC_002794.1 + 143556 0.66 0.983401
Target:  5'- aGCACGGUGgcccagCCGUGCgCgccguccucgGCGGCGc- -3'
miRNA:   3'- -CGUGCUACa-----GGCAUGgGa---------CGCUGUac -5'
11055 5' -53.2 NC_002794.1 + 30065 0.66 0.981432
Target:  5'- cCGCGggGUCCGgucGCCCgGuCGACGa- -3'
miRNA:   3'- cGUGCuaCAGGCa--UGGGaC-GCUGUac -5'
11055 5' -53.2 NC_002794.1 + 138438 0.67 0.979294
Target:  5'- cCGCGGUGgcggcggcgCCucGgCCUGCGACGUGg -3'
miRNA:   3'- cGUGCUACa--------GGcaUgGGACGCUGUAC- -5'
11055 5' -53.2 NC_002794.1 + 195107 0.67 0.976978
Target:  5'- aGUACGgcGUCuCGUGCgCCcGCGGCGc- -3'
miRNA:   3'- -CGUGCuaCAG-GCAUG-GGaCGCUGUac -5'
11055 5' -53.2 NC_002794.1 + 86982 0.68 0.962489
Target:  5'- uGCgACGAgGUCCGgcgGCUUucgGCGGCGUGg -3'
miRNA:   3'- -CG-UGCUaCAGGCa--UGGGa--CGCUGUAC- -5'
11055 5' -53.2 NC_002794.1 + 21584 0.68 0.962489
Target:  5'- uGCGCGAccggggcgGUCUGUGCCC-GUGACc-- -3'
miRNA:   3'- -CGUGCUa-------CAGGCAUGGGaCGCUGuac -5'
11055 5' -53.2 NC_002794.1 + 34063 0.68 0.951251
Target:  5'- cGCACGAcccgCCGUuCCCgccgGCGGCcgGg -3'
miRNA:   3'- -CGUGCUaca-GGCAuGGGa---CGCUGuaC- -5'
11055 5' -53.2 NC_002794.1 + 6364 0.68 0.951251
Target:  5'- aCAUGGUGUCgCGgucccugGCCCUGCG-CcgGg -3'
miRNA:   3'- cGUGCUACAG-GCa------UGGGACGCuGuaC- -5'
11055 5' -53.2 NC_002794.1 + 104449 0.69 0.933059
Target:  5'- cGCGgGcgGcCCGaGCCCggGCGGCGUGu -3'
miRNA:   3'- -CGUgCuaCaGGCaUGGGa-CGCUGUAC- -5'
11055 5' -53.2 NC_002794.1 + 21887 0.7 0.911088
Target:  5'- cGCGgGGUGUCCGcGgCCUGCGuCGg- -3'
miRNA:   3'- -CGUgCUACAGGCaUgGGACGCuGUac -5'
11055 5' -53.2 NC_002794.1 + 60978 0.71 0.878377
Target:  5'- cGCGCGcc-UCCGgACCCUccugcGCGACAUGa -3'
miRNA:   3'- -CGUGCuacAGGCaUGGGA-----CGCUGUAC- -5'
11055 5' -53.2 NC_002794.1 + 142582 0.72 0.840243
Target:  5'- aGCGCGAUGggCGcGCCCUGgGGgAUGa -3'
miRNA:   3'- -CGUGCUACagGCaUGGGACgCUgUAC- -5'
11055 5' -53.2 NC_002794.1 + 103268 0.72 0.832027
Target:  5'- uGCACGAUGUCCaggACCagcGCGuACGUGu -3'
miRNA:   3'- -CGUGCUACAGGca-UGGga-CGC-UGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.