miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 101584 0.65 0.705237
Target:  5'- gCCGCCgCGGCcgggggggcggguGCCgGCCcgCCGggcgggGGUGCCg -3'
miRNA:   3'- -GGCGG-GCUG-------------CGGaCGG--GGCa-----UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 57441 0.65 0.705237
Target:  5'- gCGCCCGucauccaGCaCCUGCUCCacgcgcuGCGCCc -3'
miRNA:   3'- gGCGGGC-------UGcGGACGGGGcau----CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 117720 0.66 0.69689
Target:  5'- -aGCUCcGCGUCUGCuCCaCGUAG-GCCu -3'
miRNA:   3'- ggCGGGcUGCGGACG-GG-GCAUCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 57621 0.66 0.69689
Target:  5'- gCGgCCGACGaCCUGgccgaCCCGcaguuccuGCGCCc -3'
miRNA:   3'- gGCgGGCUGC-GGACg----GGGCau------CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 12036 0.66 0.69689
Target:  5'- gCGUCCG-CGCCUuCCCCugccgGUAucucugggccGCGCCg -3'
miRNA:   3'- gGCGGGCuGCGGAcGGGG-----CAU----------CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 83764 0.66 0.69689
Target:  5'- uCUGCCCguacgacgacGACGCCgccGCCgCGUc-CGCCg -3'
miRNA:   3'- -GGCGGG----------CUGCGGa--CGGgGCAucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 55431 0.66 0.69689
Target:  5'- gCGUCCG-CGUC-GCCCCGcAGCGa- -3'
miRNA:   3'- gGCGGGCuGCGGaCGGGGCaUCGCgg -5'
11056 3' -63.5 NC_002794.1 + 113670 0.66 0.69689
Target:  5'- uCCaGCgCGGCgagcagGCCcGCCaCCGUcggcAGCGCCa -3'
miRNA:   3'- -GG-CGgGCUG------CGGaCGG-GGCA----UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 74487 0.66 0.69689
Target:  5'- uCCGCCCGAC-CCgacucgGCaccuuCCCGcAGCucGCCu -3'
miRNA:   3'- -GGCGGGCUGcGGa-----CG-----GGGCaUCG--CGG- -5'
11056 3' -63.5 NC_002794.1 + 80435 0.66 0.69689
Target:  5'- gCCGCcgCCGGCgGCCgccGgCCCGUcGGCgGCCc -3'
miRNA:   3'- -GGCG--GGCUG-CGGa--CgGGGCA-UCG-CGG- -5'
11056 3' -63.5 NC_002794.1 + 142901 0.66 0.69689
Target:  5'- gUGCCCGGCGUC--CUCCG-GGgGCCg -3'
miRNA:   3'- gGCGGGCUGCGGacGGGGCaUCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 115611 0.66 0.69689
Target:  5'- cUCGCCCGGCGCCgggaggcggGUCagGUGGUucagggcgugaGCCa -3'
miRNA:   3'- -GGCGGGCUGCGGa--------CGGggCAUCG-----------CGG- -5'
11056 3' -63.5 NC_002794.1 + 48036 0.66 0.69689
Target:  5'- aCGCCgGACGCCgagugcGUgCUGggcacGGCGCUg -3'
miRNA:   3'- gGCGGgCUGCGGa-----CGgGGCa----UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 38450 0.66 0.69689
Target:  5'- aCUGaggagCCGGCGCg-GCCgCGgcGCGCCc -3'
miRNA:   3'- -GGCg----GGCUGCGgaCGGgGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 12469 0.66 0.691304
Target:  5'- cCUGCCCGACGaccgucugaucgucaCCUGCacguuCCCG-AGcCGCUc -3'
miRNA:   3'- -GGCGGGCUGC---------------GGACG-----GGGCaUC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 183120 0.66 0.687571
Target:  5'- gUGUUCGGCGgCgGCuCCCGUAcGCGCa -3'
miRNA:   3'- gGCGGGCUGCgGaCG-GGGCAU-CGCGg -5'
11056 3' -63.5 NC_002794.1 + 26629 0.66 0.687571
Target:  5'- aCCGUCCG-CGUCcgcGCaCCCGgacGGCgGCCg -3'
miRNA:   3'- -GGCGGGCuGCGGa--CG-GGGCa--UCG-CGG- -5'
11056 3' -63.5 NC_002794.1 + 107133 0.66 0.687571
Target:  5'- aCCGCgacgggaaCGACGUCggcGCCCCcGgcgAGgGCCg -3'
miRNA:   3'- -GGCGg-------GCUGCGGa--CGGGG-Ca--UCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 193702 0.66 0.687571
Target:  5'- -aGUCCGAuucccccuCGCCcGCCCCGccGGUGUCc -3'
miRNA:   3'- ggCGGGCU--------GCGGaCGGGGCa-UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 69819 0.66 0.687571
Target:  5'- gCCGCgaCCGGCGUCcGCCCgGUc-CGCUg -3'
miRNA:   3'- -GGCG--GGCUGCGGaCGGGgCAucGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.