Results 41 - 60 of 399 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11056 | 3' | -63.5 | NC_002794.1 | + | 74487 | 0.66 | 0.69689 |
Target: 5'- uCCGCCCGAC-CCgacucgGCaccuuCCCGcAGCucGCCu -3' miRNA: 3'- -GGCGGGCUGcGGa-----CG-----GGGCaUCG--CGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 80435 | 0.66 | 0.69689 |
Target: 5'- gCCGCcgCCGGCgGCCgccGgCCCGUcGGCgGCCc -3' miRNA: 3'- -GGCG--GGCUG-CGGa--CgGGGCA-UCG-CGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 142901 | 0.66 | 0.69689 |
Target: 5'- gUGCCCGGCGUC--CUCCG-GGgGCCg -3' miRNA: 3'- gGCGGGCUGCGGacGGGGCaUCgCGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 115611 | 0.66 | 0.69689 |
Target: 5'- cUCGCCCGGCGCCgggaggcggGUCagGUGGUucagggcgugaGCCa -3' miRNA: 3'- -GGCGGGCUGCGGa--------CGGggCAUCG-----------CGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 48036 | 0.66 | 0.69689 |
Target: 5'- aCGCCgGACGCCgagugcGUgCUGggcacGGCGCUg -3' miRNA: 3'- gGCGGgCUGCGGa-----CGgGGCa----UCGCGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 76122 | 0.66 | 0.687571 |
Target: 5'- cCCGCCCucUGaCC-GCCCCGcAGCuGUCg -3' miRNA: 3'- -GGCGGGcuGC-GGaCGGGGCaUCG-CGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 183120 | 0.66 | 0.687571 |
Target: 5'- gUGUUCGGCGgCgGCuCCCGUAcGCGCa -3' miRNA: 3'- gGCGGGCUGCgGaCG-GGGCAU-CGCGg -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 26629 | 0.66 | 0.687571 |
Target: 5'- aCCGUCCG-CGUCcgcGCaCCCGgacGGCgGCCg -3' miRNA: 3'- -GGCGGGCuGCGGa--CG-GGGCa--UCG-CGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 118388 | 0.66 | 0.678214 |
Target: 5'- gCCGCUCGGCGgC-GCucagCCCGUAGCaCUg -3' miRNA: 3'- -GGCGGGCUGCgGaCG----GGGCAUCGcGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 145745 | 0.66 | 0.678214 |
Target: 5'- gCGCCggcauCGACGgC-GaCCCCGagcgAGCGCCa -3' miRNA: 3'- gGCGG-----GCUGCgGaC-GGGGCa---UCGCGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 12921 | 0.66 | 0.686637 |
Target: 5'- aCCGCCuggccguCGACGaCCUGgcggaCUUCGUGGCGUUg -3' miRNA: 3'- -GGCGG-------GCUGC-GGAC-----GGGGCAUCGCGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 66646 | 0.66 | 0.681961 |
Target: 5'- uCCGUCCGggggcaucgguaacgGCGUCguggucaacgGCCCCG--GCGCCc -3' miRNA: 3'- -GGCGGGC---------------UGCGGa---------CGGGGCauCGCGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 16534 | 0.66 | 0.687571 |
Target: 5'- gCCGucCCCGGCGU---CCCCGgcGuCGCCa -3' miRNA: 3'- -GGC--GGGCUGCGgacGGGGCauC-GCGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 33684 | 0.66 | 0.687571 |
Target: 5'- gCGCUCGcuGCGCCUG-UUCGUGGCgggcgaGCCg -3' miRNA: 3'- gGCGGGC--UGCGGACgGGGCAUCG------CGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 49109 | 0.66 | 0.687571 |
Target: 5'- gCGCUCGGCGuCCUGCaCCG-GGaccgGCCg -3' miRNA: 3'- gGCGGGCUGC-GGACGgGGCaUCg---CGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 151338 | 0.66 | 0.687571 |
Target: 5'- uCCuCCgCGAcCGCCUGCaaCUCGgcuUGGCGCCc -3' miRNA: 3'- -GGcGG-GCU-GCGGACG--GGGC---AUCGCGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 30734 | 0.66 | 0.687571 |
Target: 5'- uCCGCCCGAa--CUGgCCgCGgcUGGCGCg -3' miRNA: 3'- -GGCGGGCUgcgGACgGG-GC--AUCGCGg -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 69819 | 0.66 | 0.687571 |
Target: 5'- gCCGCgaCCGGCGUCcGCCCgGUc-CGCUg -3' miRNA: 3'- -GGCG--GGCUGCGGaCGGGgCAucGCGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 193702 | 0.66 | 0.687571 |
Target: 5'- -aGUCCGAuucccccuCGCCcGCCCCGccGGUGUCc -3' miRNA: 3'- ggCGGGCU--------GCGGaCGGGGCa-UCGCGG- -5' |
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11056 | 3' | -63.5 | NC_002794.1 | + | 107133 | 0.66 | 0.687571 |
Target: 5'- aCCGCgacgggaaCGACGUCggcGCCCCcGgcgAGgGCCg -3' miRNA: 3'- -GGCGg-------GCUGCGGa--CGGGG-Ca--UCgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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