miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 72456 0.82 0.079167
Target:  5'- gCGCCCcGCGCCcgGCCCCGcggcGGCGCCg -3'
miRNA:   3'- gGCGGGcUGCGGa-CGGGGCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 194263 0.8 0.101151
Target:  5'- cUCGCCCGACGCC-GCCUCGcacGGCGCg -3'
miRNA:   3'- -GGCGGGCUGCGGaCGGGGCa--UCGCGg -5'
11056 3' -63.5 NC_002794.1 + 10975 0.8 0.103642
Target:  5'- aCGUCCGAUGCCUGCUCCG-AG-GCCg -3'
miRNA:   3'- gGCGGGCUGCGGACGGGGCaUCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 67845 0.8 0.116987
Target:  5'- gUCGCCCGGCGCC-GCCgCgCGUcacccGGCGCCa -3'
miRNA:   3'- -GGCGGGCUGCGGaCGG-G-GCA-----UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 51359 0.79 0.119554
Target:  5'- gCCGCCCGAggcgGCC-GCCCCGUccggccggcgacaGGCGCCc -3'
miRNA:   3'- -GGCGGGCUg---CGGaCGGGGCA-------------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 59295 0.78 0.145113
Target:  5'- gCCGCUCGACGCCgcgcaGCgCCaCGgcGCGCCc -3'
miRNA:   3'- -GGCGGGCUGCGGa----CG-GG-GCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 80388 0.78 0.145113
Target:  5'- cCCGCCgCGAcuaccuacuCGCCgcgGCCCagGUGGCGCCg -3'
miRNA:   3'- -GGCGG-GCU---------GCGGa--CGGGg-CAUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 193791 0.78 0.148595
Target:  5'- aUCGCCCGAcgaCGCCgGCgCCCGcucgucUGGCGCCg -3'
miRNA:   3'- -GGCGGGCU---GCGGaCG-GGGC------AUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 49440 0.77 0.159499
Target:  5'- gCGUCCGGCGCggucGUCgCCGUGGCGCCg -3'
miRNA:   3'- gGCGGGCUGCGga--CGG-GGCAUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 67323 0.77 0.171121
Target:  5'- gCGCCCGuacauCGCCagggUGCCCCG--GCGCCg -3'
miRNA:   3'- gGCGGGCu----GCGG----ACGGGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 190469 0.77 0.175161
Target:  5'- gCGCCCGACGCCcacgggUGCCCCa---CGCCg -3'
miRNA:   3'- gGCGGGCUGCGG------ACGGGGcaucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 12179 0.77 0.175161
Target:  5'- gCCG-CCGACGCC-GCCgCGgccgGGCGCCg -3'
miRNA:   3'- -GGCgGGCUGCGGaCGGgGCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 12583 0.77 0.179284
Target:  5'- cCCGUUCGGCGCCUGCguCCCcacgcuGCGCCa -3'
miRNA:   3'- -GGCGGGCUGCGGACG--GGGcau---CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 59675 0.77 0.179284
Target:  5'- gCCGCCUG-CGCCUGCaCCCGggcuuCGCCc -3'
miRNA:   3'- -GGCGGGCuGCGGACG-GGGCauc--GCGG- -5'
11056 3' -63.5 NC_002794.1 + 83010 0.77 0.183494
Target:  5'- gCGCCCGAucUGC--GCCCCGUcccGGCGCCg -3'
miRNA:   3'- gGCGGGCU--GCGgaCGGGGCA---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 82371 0.76 0.192176
Target:  5'- gCCGCCCGAcacCGCCgcgGCggaCCGcGGCGCCc -3'
miRNA:   3'- -GGCGGGCU---GCGGa--CGg--GGCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 111845 0.76 0.205404
Target:  5'- uCUGCCCGAgagccgucgccacCGCCaggGCCuuGUAGCGCg -3'
miRNA:   3'- -GGCGGGCU-------------GCGGa--CGGggCAUCGCGg -5'
11056 3' -63.5 NC_002794.1 + 50803 0.76 0.205874
Target:  5'- cUCGCCCGGCGUCgggcGCUCCG--GCGCCc -3'
miRNA:   3'- -GGCGGGCUGCGGa---CGGGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 145527 0.76 0.205874
Target:  5'- gCCgGCCCGAgCGCCUcgggcGCCCCG-AGCgGCCc -3'
miRNA:   3'- -GG-CGGGCU-GCGGA-----CGGGGCaUCG-CGG- -5'
11056 3' -63.5 NC_002794.1 + 194038 0.76 0.205874
Target:  5'- cUCGCCCGcCGCCgccGCCgCCGccgccgagAGCGCCg -3'
miRNA:   3'- -GGCGGGCuGCGGa--CGG-GGCa-------UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.