miRNA display CGI


Results 41 - 60 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 53972 0.73 0.287452
Target:  5'- uCCGCuCCGucCGgCUGCCCCGcgccAGCGUCu -3'
miRNA:   3'- -GGCG-GGCu-GCgGACGGGGCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 187908 0.73 0.287452
Target:  5'- gCCGCUCGccCGCCggGCCCCGccGCGaCCg -3'
miRNA:   3'- -GGCGGGCu-GCGGa-CGGGGCauCGC-GG- -5'
11056 3' -63.5 NC_002794.1 + 125642 0.73 0.287452
Target:  5'- gCGCCuagCGGCGuUCUGCCUCGgcGCGCUg -3'
miRNA:   3'- gGCGG---GCUGC-GGACGGGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 85000 0.73 0.29245
Target:  5'- -aGCCCGAcCGCCgcgcucgggUGCCCCGggcccacgcucgGGUGCCu -3'
miRNA:   3'- ggCGGGCU-GCGG---------ACGGGGCa-----------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 61856 0.73 0.293079
Target:  5'- gCGCCCcauggacGACGCCgcGCgCCGUcgucGGCGCCg -3'
miRNA:   3'- gGCGGG-------CUGCGGa-CGgGGCA----UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 58045 0.73 0.29371
Target:  5'- gCCGCCCGucccCGUCggcgGCCCCGgcGGCGgCg -3'
miRNA:   3'- -GGCGGGCu---GCGGa---CGGGGCa-UCGCgG- -5'
11056 3' -63.5 NC_002794.1 + 150564 0.73 0.29371
Target:  5'- gCGCUgGAgcucaucaaCGCCUGCCCUcgGGCGCCc -3'
miRNA:   3'- gGCGGgCU---------GCGGACGGGGcaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 80525 0.73 0.29371
Target:  5'- gCGCgCGACGCCUGgCaCCG--GCGCCu -3'
miRNA:   3'- gGCGgGCUGCGGACgG-GGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 24000 0.73 0.29371
Target:  5'- uCCGUCCGACGg--GCCgCCGUcaccgcGGCGCCu -3'
miRNA:   3'- -GGCGGGCUGCggaCGG-GGCA------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 143838 0.73 0.298153
Target:  5'- gCCgGUCCGACGCCUccggccaggcgaucGCCgCCGcGGCGUCa -3'
miRNA:   3'- -GG-CGGGCUGCGGA--------------CGG-GGCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 119544 0.73 0.299432
Target:  5'- uCCGCggCCGuCGCCggccacgUGUCCCGgAGCGCCu -3'
miRNA:   3'- -GGCG--GGCuGCGG-------ACGGGGCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 107275 0.73 0.300073
Target:  5'- gCCGUCCGcCGCCgucGCCCCGU--CGUCg -3'
miRNA:   3'- -GGCGGGCuGCGGa--CGGGGCAucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 64384 0.73 0.300073
Target:  5'- -aGCCUG-CGCCUccGCCCCGgccagAGgGCCa -3'
miRNA:   3'- ggCGGGCuGCGGA--CGGGGCa----UCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 108282 0.73 0.305891
Target:  5'- gCCGCaCCGAgGCCcgguaucUGaUCCCGUuGCGCCg -3'
miRNA:   3'- -GGCG-GGCUgCGG-------AC-GGGGCAuCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 47396 0.73 0.306543
Target:  5'- -aGCCCGA-GCCcgaaGCCgCCGUcGGCGCCg -3'
miRNA:   3'- ggCGGGCUgCGGa---CGG-GGCA-UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 90215 0.73 0.310476
Target:  5'- uCCGCCCGccGCGCCggaGCCCCGccugugguccccGCGCg -3'
miRNA:   3'- -GGCGGGC--UGCGGa--CGGGGCau----------CGCGg -5'
11056 3' -63.5 NC_002794.1 + 41250 0.73 0.313119
Target:  5'- gCCG-CCGACGCCggcgGCCCguCGUcGCGCUc -3'
miRNA:   3'- -GGCgGGCUGCGGa---CGGG--GCAuCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 50729 0.73 0.317785
Target:  5'- gCCGCCCGGggcggcCGCCUcgacucgcucguccGCCCCGggcGGCGgCg -3'
miRNA:   3'- -GGCGGGCU------GCGGA--------------CGGGGCa--UCGCgG- -5'
11056 3' -63.5 NC_002794.1 + 11077 0.73 0.319801
Target:  5'- -gGUaCGcCGCCUGCCUCGUcgucGGCGCCa -3'
miRNA:   3'- ggCGgGCuGCGGACGGGGCA----UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 101951 0.72 0.326589
Target:  5'- gCUGCCC--UGCCUG-CCCGUGGCGgCg -3'
miRNA:   3'- -GGCGGGcuGCGGACgGGGCAUCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.