miRNA display CGI


Results 61 - 80 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 58429 0.72 0.333484
Target:  5'- gCCGCCaGACGCCgagGCCaCGcuGCGCCu -3'
miRNA:   3'- -GGCGGgCUGCGGa--CGGgGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 130647 0.72 0.333484
Target:  5'- cCCGCCCGcCGCCccGCCgCCGgccgcgGGCuccGCCg -3'
miRNA:   3'- -GGCGGGCuGCGGa-CGG-GGCa-----UCG---CGG- -5'
11056 3' -63.5 NC_002794.1 + 189567 0.72 0.333484
Target:  5'- cCCGCUCGGuCgGCCgGCCCgGgccGGCGCCc -3'
miRNA:   3'- -GGCGGGCU-G-CGGaCGGGgCa--UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 48333 0.72 0.338374
Target:  5'- aCgGCCCGguacucccggugguACGCCUGCUCCGcgaccAGcCGCCa -3'
miRNA:   3'- -GgCGGGC--------------UGCGGACGGGGCa----UC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 182991 0.72 0.340485
Target:  5'- aCGgCCGGCGCUUcgccgcgggcGCCCCGcgcGCGCCc -3'
miRNA:   3'- gGCgGGCUGCGGA----------CGGGGCau-CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 107516 0.72 0.340485
Target:  5'- gCCGgUCGACGCCgacgGCCggCGcGGCGCCg -3'
miRNA:   3'- -GGCgGGCUGCGGa---CGGg-GCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 184500 0.72 0.340485
Target:  5'- aCGCCCGggcgGCGCggGCCCCGcgcgcGGCGCg -3'
miRNA:   3'- gGCGGGC----UGCGgaCGGGGCa----UCGCGg -5'
11056 3' -63.5 NC_002794.1 + 66572 0.72 0.340485
Target:  5'- aUCG-CCGGCGCCggcggcaGCCCCG-AGUGCUg -3'
miRNA:   3'- -GGCgGGCUGCGGa------CGGGGCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 190643 0.72 0.345449
Target:  5'- -aGCCCGGCGUgUGCaggaucacgucgcgCCCGccGCGCCg -3'
miRNA:   3'- ggCGGGCUGCGgACG--------------GGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 54391 0.72 0.346877
Target:  5'- cCCGCgUCGACGCCcGCCUCGcggagcucgcagaUGuGCGCCa -3'
miRNA:   3'- -GGCG-GGCUGCGGaCGGGGC-------------AU-CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 36525 0.72 0.347592
Target:  5'- gUCGCCCGuCGCCU-CCCaccAGUGCCg -3'
miRNA:   3'- -GGCGGGCuGCGGAcGGGgcaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 123902 0.72 0.347592
Target:  5'- cCCGCCCGAgcUGCC-GCCUC---GCGCCg -3'
miRNA:   3'- -GGCGGGCU--GCGGaCGGGGcauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 113532 0.72 0.347592
Target:  5'- gCCgGCUCGGCGUCgccgGCCCgGagcaGGCGCCg -3'
miRNA:   3'- -GG-CGGGCUGCGGa---CGGGgCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 96183 0.72 0.347592
Target:  5'- gUGCaCCGGCGCCUGCCggCCGagucccugccGGCGCUg -3'
miRNA:   3'- gGCG-GGCUGCGGACGG--GGCa---------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 85187 0.72 0.347592
Target:  5'- aCGCCCGACGCCcGacgggggaCCCu--GCGCCc -3'
miRNA:   3'- gGCGGGCUGCGGaCg-------GGGcauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 183439 0.72 0.347592
Target:  5'- gCGggaCCGGCGCCcGCCaCCGccGGCGCCc -3'
miRNA:   3'- gGCg--GGCUGCGGaCGG-GGCa-UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 46120 0.72 0.354078
Target:  5'- cCCGCCCG-CGUCggcucCCCCGUccgagucGGCGUCg -3'
miRNA:   3'- -GGCGGGCuGCGGac---GGGGCA-------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 117634 0.72 0.354804
Target:  5'- -gGCgCCGAcCGCgCgGCCCCGgacgaagAGCGCCa -3'
miRNA:   3'- ggCG-GGCU-GCG-GaCGGGGCa------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 19315 0.72 0.354804
Target:  5'- aCCGCCC-ACGCCgcgcugGCgaCCCGc-GCGCCg -3'
miRNA:   3'- -GGCGGGcUGCGGa-----CG--GGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 188338 0.72 0.354804
Target:  5'- gCCGCCggCGGCGCCgucGCgCCCGUccggccggcGGCgGCCg -3'
miRNA:   3'- -GGCGG--GCUGCGGa--CG-GGGCA---------UCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.